Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

57629519 .. 57631389

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTCGCTCCAGCTTTACCTTCCATTCTCCACCGGTCCATCTCTACCCAATTTCCGGTTCAGACGCACTCCGGTCCGATCCTCCAGCGAGCGGCAGGCTCTCTTCAACCGCATTGCCCCTGTCTACGACAACTTAAATGATTTGCTGAGCTTGGGTCAGCACAGAATCTGGAAAAGAATGGCTGTGTCATGGAGTGGTGCAAAAATGGGTGATAGTGTATTGGATTTGTGCTGTGGAAGTGGGGATATAGCGTTTCTGTTGTCTGAGAAAGTTGAGGTCAATGGCAAGGTGATTGGTTTGGATTTTTCAAAAAAGCAGTTATCGGTTGCGTCTTCCCGGCAGAAGGTGAAGTCCAAAGCCTGCTACATGAACATTGAGTGGGTCGAAGGTGATGCACTTGATTTGCCATTTTCTAATGGTCAATTTGATGCTATAACTATGGGTTATGGGCTGCGAAATGTAGTAGACAAACATAAGGCAATGCAGGAAATTTTTAGAGTTTTGAAACCAGGCTCAAGAGTGTCTATCCTTGATTTTAATAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATGTTGTTGTCCCTGTGGCTTCTGGTTTTGGCCTTGAAGAGGATTACAAATACTTAAGGAGATCAATCAGGGAATTTTTGACAGGGGAGGAGTTGGAGAAGCTCGCTTTAGATGTAGGTTTTTCTGATGCAAGATATTATGAGTTTGGTGGACGCCTTATGGGGAACTTAGTAGCCACCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

258

Amino Acids

28.93

Weight (kDa)

8.9

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	33 - 250	9.5e-61	ubiE/COQ5 methyltransferase family
PCMT	PF01135	62 - 155	6.5e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_23	PF13489	69 - 239	4.6e-12	Methyltransferase domain
Methyltransf_31	PF13847	71 - 186	2.2e-23	Methyltransferase domain
Methyltransf_25	PF13649	74 - 172	2.7e-21	Methyltransferase domain
Methyltransf_11	PF08241	75 - 175	1.8e-19	Methyltransferase domain
Methyltransf_12	PF08242	75 - 174	8.3e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	94
AccI	GTMKAC	2 cut(s)	126, 468
AciI	CCGC	3 cut(s)	94, 112, 772
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	492, 665
AcyI	GRCGYC	1 cut(s)	745
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
AflII	CTTAAG	1 cut(s)	646
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	109, 312, 508, 629
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	16, 153, 694
AluI	AGCT	3 cut(s)	16, 153, 694
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	2 cut(s)	171, 563
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	492, 665
AsiGI	ACCGGT	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	38, 76
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	224, 304, 361, 404
AvaII	GGWCC	2 cut(s)	38, 76
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	340
BfrI	CTTAAG	1 cut(s)	646
BisI	GCNGC	2 cut(s)	95, 455
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	96, 456
Bme1390I	CCNGG	2 cut(s)	340, 513
Bme18I	GGWCC	2 cut(s)	38, 76
BmgT120I	GGNCC	2 cut(s)	38, 76
BmrFI	CCNGG	2 cut(s)	340, 513
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	385, 421, 709
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	745
BsaWI	WCCGGW	3 cut(s)	35, 57, 73
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	114, 489
BseBI	CCWGG	1 cut(s)	513
BseLI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
BseMI	GCAATG	2 cut(s)	114, 489
BseMII	CTCAG	2 cut(s)	140, 258
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	1 cut(s)	624
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	36, 58, 74, 340
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	80, 653
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	94, 112, 772
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	141, 259
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	646
BsrBI	CCGCTC	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	114, 489
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	2 cut(s)	80, 653
BssNI	GRCGYC	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	513
Bst6I	CTCTTC	2 cut(s)	110, 624
BstACI	GRCGYC	1 cut(s)	745
BstAFI	CTTAAG	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	92, 99, 364, 696
BstDEI	CTNAG	3 cut(s)	149, 267, 760
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstKTI	GATC	2 cut(s)	83, 656
BstMBI	GATC	2 cut(s)	80, 653
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	2 cut(s)	338, 511
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	624
Cac8I	GCNNGC	4 cut(s)	92, 99, 364, 696
CaiI	CAGNNNCTG	2 cut(s)	171, 563
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	38, 76
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	3 cut(s)	75, 321, 753
Csp6I	GTAC	1 cut(s)	549
CspAI	ACCGGT	1 cut(s)	35
CspI	CGGWCCG	1 cut(s)	76
CviAII	CATG	2 cut(s)	192, 370
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	3 cut(s)	149, 267, 760
DpnI	GATC	2 cut(s)	82, 655
DpnII	GATC	2 cut(s)	80, 653
Eam1104I	CTCTTC	2 cut(s)	110, 624
EarI	CTCTTC	2 cut(s)	110, 624
Eco47I	GGWCC	2 cut(s)	38, 76
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	195, 373
FaiI	YATR	9 cut(s)	193, 251, 371, 437, 443, 450, 477, 732, 752
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	191, 369
FblI	GTMKAC	2 cut(s)	126, 468
Fnu4HI	GCNGC	2 cut(s)	95, 455
Fsp4HI	GCNGC	2 cut(s)	95, 455
GluI	GCNGC	2 cut(s)	95, 455
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	4 cut(s)	36, 58, 74, 340
HgaI	GACGC	3 cut(s)	75, 321, 753
Hin1I	GRCGYC	1 cut(s)	745
Hin1II	CATG	2 cut(s)	195, 373
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	4 cut(s)	36, 58, 74, 340
HphI	GGTGA	4 cut(s)	224, 304, 361, 404
Hpy166II	GTNNAC	3 cut(s)	127, 469, 743
Hpy188I	TCNGA	4 cut(s)	65, 80, 268, 718
Hpy188III	TCNNGA	3 cut(s)	172, 519, 575
Hpy8I	GTNNAC	3 cut(s)	127, 469, 743
HpyAV	CCTTC	3 cut(s)	32, 340, 383
HpyCH4V	TGCA	4 cut(s)	203, 398, 487, 722
HpyF3I	CTNAG	3 cut(s)	149, 267, 760
Hsp92I	GRCGYC	1 cut(s)	745
Hsp92II	CATG	2 cut(s)	195, 373
Kzo9I	GATC	2 cut(s)	80, 653
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	3 cut(s)	385, 421, 709
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	82, 655
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	2 cut(s)	80, 653
MboII	GAAGA	3 cut(s)	97, 327, 641
MluCI	AATT	4 cut(s)	52, 425, 492, 665
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	5 cut(s)	94, 271, 577, 625, 673
MseI	TTAA	3 cut(s)	137, 540, 647
MspCI	CTTAAG	1 cut(s)	646
MspI	CCGG	4 cut(s)	36, 58, 74, 340
MspR9I	CCNGG	2 cut(s)	340, 513
MvaI	CCWGG	1 cut(s)	513
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	80, 653
NlaIII	CATG	2 cut(s)	195, 373
PfeI	GAWTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	96, 456
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	38, 76
PstNI	CAGNNNCTG	2 cut(s)	171, 563
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	137, 540, 647
SatI	GCNGC	2 cut(s)	95, 455
Sau3AI	GATC	2 cut(s)	80, 653
Sau96I	GGNCC	2 cut(s)	38, 76
ScrFI	CCNGG	2 cut(s)	340, 513
SetI	ASST	9 cut(s)	18, 24, 155, 282, 294, 351, 394, 696, 712
SfaNI	GCATC	3 cut(s)	385, 421, 709
SinI	GGWCC	2 cut(s)	38, 76
SmlI	CTYRAG	2 cut(s)	517, 646
SmoI	CTYRAG	2 cut(s)	517, 646
Sse9I	AATT	4 cut(s)	52, 425, 492, 665
SsiI	CCGC	3 cut(s)	94, 112, 772
StyD4I	CCNGG	2 cut(s)	338, 511
TaqI	TCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	52, 425, 492, 665
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	137, 540, 647
Tru9I	TTAA	3 cut(s)	137, 540, 647
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	38, 76
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	492, 665
XmiI	GTMKAC	2 cut(s)	126, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.