Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

19943203 .. 19948155

Gene Structure 4953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAAATGGCTTGAAATTGAAGCGGCTAAGGCAATGTCTAACCAAGCAGACTTCTCTGCCATTGTTCTTATTGAAACGTCAAATCCATAAAGTTAAATGGTGGATAGAATTTTATCAAAGCGGTGCAGGTCGCATATATGTGATCGACACAAAAACAGATCCAAAAGCTCCCTCTCTGCATAAAGTTGTTGACCCTAAAGACATCGTACAGAAGATTGGATTGGCATACCCACACACATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGTTCCAGACCCCCATCAAATTGGCCTACTAATTGATGTCCAGCTGTATCCTTTGAATCCATTAGATATGTCAAAATGCATAGTTAAGGAACAATCAGCAGGAACAATATGTTGGGGCTTTGAAGAAGTAACCCTATTACAGGGAGGAGATAACCCTTTGATTTGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

156

Amino Acids

17.57

Weight (kDa)

8.82

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	43 - 90	1.6e-14	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AciI	CCGC	2 cut(s)	25, 123
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	16, 22, 76, 355, 422
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 394, 426
AluBI	AGCT	2 cut(s)	170, 343
AluI	AGCT	2 cut(s)	170, 343
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	272
BccI	CCATC	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	459
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	439
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	144, 160
BspACI	CCGC	2 cut(s)	25, 123
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	41
BssMI	GATC	2 cut(s)	144, 160
BstDEI	CTNAG	2 cut(s)	29, 279
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstKTI	GATC	2 cut(s)	147, 163
BstMBI	GATC	2 cut(s)	144, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	209
CviJI	RGCY	6 cut(s)	12, 28, 170, 324, 343, 417
CviKI_1	RGCY	6 cut(s)	12, 28, 170, 324, 343, 417
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	29, 279
DpnI	GATC	2 cut(s)	146, 162
DpnII	GATC	2 cut(s)	144, 160
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoT22I	ATGCAT	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	277, 355
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	128, 181, 254, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	29, 279
HpySE526I	ACGT	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	144, 160
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	114, 243, 318, 353, 384, 425
LweI	GCATC	1 cut(s)	263
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	146, 162
MboI	GATC	2 cut(s)	144, 160
MboII	GAAGA	3 cut(s)	226, 259, 434
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	4 cut(s)	17, 110, 318, 330
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	184, 437
Mph1103I	ATGCAT	1 cut(s)	380
MseI	TTAA	3 cut(s)	96, 287, 384
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	144, 160
NsiI	ATGCAT	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	96, 287, 384
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	144, 160
SchI	GAGTC	1 cut(s)	271
SetI	ASST	4 cut(s)	82, 133, 172, 345
SfaNI	GCATC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	17, 110, 318, 330
SsiI	CCGC	2 cut(s)	25, 123
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	17, 110, 318, 330
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	96, 287, 384
Tru9I	TTAA	3 cut(s)	96, 287, 384
TscAI	CASTG	1 cut(s)	251
TspRI	CASTG	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.