Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

27627880 .. 27629649

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTCACTCCAGCTTTACCTTCCATTCTCTACCGGTTCATCTCTACCCAATTTCCGGTTCAGACGCACTCCGGTCAAATCCTCCAGCGAACGACAGGCTCTCTTCAACCGCATTGCTCCTGTCTACGACAACTTAAATGACTTGTTGAGTTTGGGTCAGCACAGAATATGGAAAAGAATGTCTGTGTCATGGAGTGGTGCAAAAAAGGGTGATAGTGTATTGGATTTGTGCTGTGGAAGTGGGGATATAGCGTTTCTGTTGTCTGAGAAAGTTGAGGTCAATGGCAAGGTGATTGGTTTGGATTTTTCGAAAGAGCAGTTATCAGTTGCTTCTTCTCGGCAAAAGTTGAAGTCCAAAGCCTGCTACATGAACATTGAGTGGGTTGAAGGTGATGCACTTGATTTGCCATTTAGTAATGGTCAATTTGATGCTATAGCTATGGGTTATGGGCTGCGAAATGTAGTAGACAAACGTAAGGCAATGCAGGAAATTTTTAGAGTTTTGAAAGCAGGGTCAAGAGTGTCCATCCTTGATTTTAATAAGAGTGCCAATCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATGTCGTTGTCCCTGTGGCTTCTGGTTTTGGCCTTGAAGAGGATTACAGATACTTAAAGAGATCAATCAGGGAATTTTTGACAGGCGAGGAGTTGGAGAAGCTCGCTTTAGATGTAGGGTTTTCTGATGCAAGATATTATGAGATTGGTGGAGGCCTTATGGGGAACTTAGTAGCCACCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

259

Amino Acids

28.71

Weight (kDa)

8.34

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	32 - 252	4.6e-60	ubiE/COQ5 methyltransferase family
PCMT	PF01135	65 - 155	5.6e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_23	PF13489	68 - 239	1.1e-09	Methyltransferase domain
Methyltransf_31	PF13847	69 - 189	3.1e-23	Methyltransferase domain
Methyltransf_25	PF13649	74 - 172	4.1e-20	Methyltransferase domain
Methyltransf_11	PF08241	75 - 175	4.9e-18	Methyltransferase domain
Methyltransf_12	PF08242	75 - 174	1.3e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	126, 468
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	492, 665
AfiI	CCNNNNNNNGG	2 cut(s)	57, 631
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	109, 352, 389, 508, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	16, 440, 694
AluI	AGCT	3 cut(s)	16, 440, 694
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	622, 745
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	492, 665
AsiGI	ACCGGT	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	224, 304, 404
AsuII	TTCGAA	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
BmsI	GCATC	3 cut(s)	385, 421, 709
BpmI	CTGGAG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	311
BsaWI	WCCGGW	3 cut(s)	35, 57, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 631
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	114, 489
BseGI	GGATG	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	57, 631
BseMI	GCAATG	2 cut(s)	114, 489
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	624, 747
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	36, 58, 74
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	57, 631
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	624, 747
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	653
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	624, 747
BspCNI	CTCAG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	114, 489
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	110, 624
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	364, 696
BstDEI	CTNAG	2 cut(s)	267, 760
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	528
BstKTI	GATC	1 cut(s)	656
BstMBI	GATC	1 cut(s)	653
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	624, 747
BtsCI	GGATG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	364, 696
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	1 cut(s)	75
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	2 cut(s)	192, 370
DdeI	CTNAG	2 cut(s)	267, 760
DpnI	GATC	1 cut(s)	655
DpnII	GATC	1 cut(s)	653
Eam1104I	CTCTTC	2 cut(s)	110, 624
EarI	CTCTTC	2 cut(s)	110, 624
Eco147I	AGGCCT	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	629
FaeI	CATG	2 cut(s)	195, 373
FaiI	YATR	9 cut(s)	172, 193, 251, 371, 437, 443, 450, 732, 752
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	191, 369
FblI	GTMKAC	2 cut(s)	126, 468
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	455
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	624, 747
HapII	CCGG	3 cut(s)	36, 58, 74
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	195, 373
HpaII	CCGG	3 cut(s)	36, 58, 74
HphI	GGTGA	3 cut(s)	224, 304, 404
Hpy166II	GTNNAC	2 cut(s)	127, 469
Hpy188I	TCNGA	3 cut(s)	65, 268, 718
Hpy188III	TCNNGA	2 cut(s)	519, 575
Hpy8I	GTNNAC	2 cut(s)	127, 469
HpyAV	CCTTC	2 cut(s)	32, 383
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	203, 398, 487, 722
HpyF3I	CTNAG	2 cut(s)	267, 760
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	195, 373
Kzo9I	GATC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	3 cut(s)	385, 421, 709
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	655
MboI	GATC	1 cut(s)	653
MboII	GAAGA	3 cut(s)	97, 327, 641
MluCI	AATT	4 cut(s)	52, 425, 492, 665
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	6 cut(s)	94, 271, 577, 625, 673, 737
MseI	TTAA	3 cut(s)	137, 540, 647
MspI	CCGG	3 cut(s)	36, 58, 74
NdeII	GATC	1 cut(s)	653
NlaIII	CATG	2 cut(s)	195, 373
NmeAIII	GCCGAG	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	747
PflFI	GACNNNGTC	1 cut(s)	593
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	593
SaqAI	TTAA	3 cut(s)	137, 540, 647
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	1 cut(s)	653
SetI	ASST	8 cut(s)	18, 24, 282, 294, 394, 442, 478, 696
SfaNI	GCATC	3 cut(s)	385, 421, 709
SfcI	CTRYAG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	311
Sse9I	AATT	4 cut(s)	52, 425, 492, 665
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	52, 425, 492, 665
Tru1I	TTAA	3 cut(s)	137, 540, 647
Tru9I	TTAA	3 cut(s)	137, 540, 647
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	30, 386
Tth111I	GACNNNGTC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	492, 665
XmiI	GTMKAC	2 cut(s)	126, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.