Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009599.1

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Forward (+)

52229 .. 55073

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009599.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggctatccttaactcggaccaagatggcgttttcagatcactttcagattcactcccaactcattgcactctaaatatagagtcgttttcgttgctagctgaatatcatggagtcagtggatatgaatcaaaagagttcgaagccggaggatacatatgttcttgggaccggaaaagaccgttctgccctcctttgggatttttttgttccgctgtgtatcgatctgatcttccactctcttctagagccgtctgctctaatccctcacacgcgagtcaaaatccacctcaatacccagaaatcagtacaaaaagagctactcaaagagtcgcagagcatagtggagagtcaaaatccacttcacaaagacctgtgttgacgaccataacttccaaaacagagccgacccagaagttggttttctcagacgagcacaaagccaccatctttgctgcagatccaagctcagaaccaagatcaggtcgcatatatatgatcgacacaaaaacagatccagaagctccctctctgcataaagttgttgaccctgaagacatcgtacagaagattggattggcatacccacacacatctcactgccttgcatctggtgatttcttctccttgactcagagtttaatgtcaagggaaggtttctcaagctatattaagttcttttttgaatcagttttgtctactatattggactctattcatgaggatatatcttttgctgtaggtttatcgtctgggagactgtcacctcttttatcgaaaatgtccaagataactgtatttcttggtcaagtcattgtatctgatgaactctggcttggccttgacacctgctaccacagtttggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

289

Amino Acids

31.91

Weight (kDa)

5.57

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	857
AccB7I	CCANNNNNTGG	2 cut(s)	418, 862
AccI	GTMKAC	1 cut(s)	698
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	455, 509
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	310, 564
AfiI	CCNNNNNNNGG	6 cut(s)	16, 196, 197, 418, 482, 862
AgsI	TTSAA	1 cut(s)	686
AjuI	GAANNNNNNNTTGG	4 cut(s)	560, 592, 819, 851
AluBI	AGCT	5 cut(s)	101, 320, 468, 524, 666
AluI	AGCT	5 cut(s)	101, 320, 468, 524, 666
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	2 cut(s)	455, 509
AoxI	GGCC	1 cut(s)	838
ApeKI	GCWGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	19, 169
AsuHPI	GGTGA	2 cut(s)	626, 756
AsuII	TTCGAA	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	19, 169
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	2 cut(s)	20, 455
BceAI	ACGGC	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	2 cut(s)	98, 246
BfmI	CTRYAG	2 cut(s)	456, 738
BfuAI	ACCTGC	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme18I	GGWCC	2 cut(s)	19, 169
BmgT120I	GGNCC	2 cut(s)	19, 169
BmiI	GGNNCC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	617
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 196, 197, 418, 482, 862
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	6 cut(s)	16, 196, 197, 418, 482, 862
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	441, 483, 647
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	840
BshVI	ATCGAT	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	147, 172
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	6 cut(s)	16, 196, 197, 418, 482, 862
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	840
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	840
BspCNI	CTCAG	3 cut(s)	440, 482, 646
BspDI	ATCGAT	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	857
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	455, 509
BspT104I	TTCGAA	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	64
BssMI	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
Bst4CI	ACNGT	4 cut(s)	183, 762, 796, 860
Bst6I	CTCTTC	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	427, 469, 633
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	7 cut(s)	41, 227, 232, 463, 482, 501, 517
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
BstSFI	CTRYAG	2 cut(s)	456, 738
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	2 cut(s)	460, 514
BstYI	RGATCY	2 cut(s)	460, 514
Bsu15I	ATCGAT	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	840
BsuTUI	ATCGAT	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	124, 598
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	19, 169
ClaI	ATCGAT	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	309, 563
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	2 cut(s)	110, 719
CviQI	GTAC	2 cut(s)	309, 563
DdeI	CTNAG	3 cut(s)	427, 469, 633
DpnI	GATC	7 cut(s)	40, 226, 231, 462, 481, 500, 516
DpnII	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	19, 169
Eco57I	CTGAAG	1 cut(s)	573
FaeI	CATG	2 cut(s)	113, 722
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	109, 718
FauNDI	CATATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	698
Fnu4HI	GCNGC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	2 cut(s)	98, 246
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	840
HapII	CCGG	2 cut(s)	147, 172
Hin1II	CATG	2 cut(s)	113, 722
HincII	GTYRAC	2 cut(s)	381, 547
HindII	GTYRAC	2 cut(s)	381, 547
HpaII	CCGG	2 cut(s)	147, 172
HphI	GGTGA	2 cut(s)	626, 756
Hpy166II	GTNNAC	3 cut(s)	381, 547, 699
Hpy188I	TCNGA	8 cut(s)	19, 38, 49, 229, 430, 472, 636, 823
Hpy188III	TCNNGA	3 cut(s)	246, 518, 719
Hpy8I	GTNNAC	3 cut(s)	381, 547, 699
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	4 cut(s)	183, 762, 796, 860
HpyCH4V	TGCA	4 cut(s)	69, 458, 535, 608
HpyF3I	CTNAG	3 cut(s)	427, 469, 633
Hsp92II	CATG	2 cut(s)	113, 722
Kzo9I	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	2 cut(s)	98, 246
MaeIII	GTNAC	1 cut(s)	762
MalI	GATC	7 cut(s)	40, 226, 231, 462, 481, 500, 516
MboI	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
MboII	GAAGA	5 cut(s)	224, 234, 566, 580, 613
MflI	RGATCY	2 cut(s)	460, 514
MhlI	GDGCHC	1 cut(s)	438
MlyI	GAGTC	7 cut(s)	92, 123, 286, 339, 359, 625, 704
MnlI	CCTC	7 cut(s)	143, 201, 277, 300, 538, 715, 777
MseI	TTAA	3 cut(s)	12, 641, 672
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	147, 172
MvnI	CGCG	1 cut(s)	275
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	113, 722
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	762
NspV	TTCGAA	1 cut(s)	141
PagI	TCATGA	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	857
PfeI	GAWTC	3 cut(s)	50, 128, 686
PflMI	CCANNNNNTGG	2 cut(s)	418, 862
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	7 cut(s)	91, 122, 285, 338, 358, 625, 704
PpsI	GAGTC	7 cut(s)	91, 122, 285, 338, 358, 625, 704
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	19, 169
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	460, 514
RsaI	GTAC	2 cut(s)	310, 564
RsaNI	GTAC	2 cut(s)	309, 563
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	12, 641, 672
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	7 cut(s)	38, 224, 229, 460, 479, 498, 514
Sau96I	GGNCC	2 cut(s)	19, 169
SchI	GAGTC	7 cut(s)	92, 123, 286, 339, 359, 625, 704
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	617
SfcI	CTRYAG	2 cut(s)	456, 738
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	2 cut(s)	19, 169
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	98, 246
TaaI	ACNGT	4 cut(s)	183, 762, 796, 860
TaqI	TCGA	4 cut(s)	141, 223, 501, 776
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	50, 128, 686
Tru1I	TTAA	3 cut(s)	12, 641, 672
Tru9I	TTAA	3 cut(s)	12, 641, 672
TscAI	CASTG	2 cut(s)	124, 605
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	3 cut(s)	141, 707, 840
TspRI	CASTG	2 cut(s)	124, 605
Van91I	CCANNNNNTGG	2 cut(s)	418, 862
VpaK11BI	GGWCC	2 cut(s)	19, 169
XbaI	TCTAGA	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	2 cut(s)	98, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.