Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

24179538 .. 24180949

Gene Structure 1412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATGATTGACTATGTCGTTGTCTCTGTGGCTTCCAGTTTTGGCCTTGAAGAGGATTATAAATACTTGACGAGATCAATCAGGGAATTTTTGATAGGTCGCATATATGTGATCAACACAAAAACAGATCCAGAAGCTCCCTCTCTGCATAAAGTTGTTAACCCTGAAGACATCGTACAGAAGATTGGATTGGCATACCCACACGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGGTTTCTCAAGCTATATTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCGGGGAGACTATCACCTCTTTTATCGAAAATGTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

117

Amino Acids

13.45

Weight (kDa)

6.82

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	33 - 70	9.6e-08	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	50, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	137, 264, 274
AluI	AGCT	3 cut(s)	137, 264, 274
Alw26I	GTCTC	2 cut(s)	28, 309
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	224, 314
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	28, 309
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	28, 309
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	74, 111, 127
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	74, 111, 127
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	231, 344
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	77, 114, 130
BstMAI	GTCTC	2 cut(s)	28, 309
BstMBI	GATC	3 cut(s)	74, 111, 127
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	176
CviJI	RGCY	5 cut(s)	32, 45, 137, 264, 274
CviKI_1	RGCY	5 cut(s)	32, 45, 137, 264, 274
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	231, 344
DpnI	GATC	3 cut(s)	76, 113, 129
DpnII	GATC	3 cut(s)	74, 111, 127
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	50
FaiI	YATR	8 cut(s)	15, 60, 104, 106, 108, 150, 196, 267
FbaI	TGATCA	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	229, 284
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	224, 314
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	231, 344
Ksp22I	TGATCA	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	74, 111, 127
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	49, 67, 144, 177, 195
LweI	GCATC	1 cut(s)	215
MalI	GATC	3 cut(s)	76, 113, 129
MboI	GATC	3 cut(s)	74, 111, 127
MboII	GAAGA	4 cut(s)	62, 179, 193, 211
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	46, 151, 292, 335
MseI	TTAA	3 cut(s)	159, 239, 270
MslI	CAYNNNNRTG	1 cut(s)	107
NdeII	GATC	3 cut(s)	74, 111, 127
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	159, 239, 270
Sau3AI	GATC	3 cut(s)	74, 111, 127
SchI	GAGTC	1 cut(s)	223
SetI	ASST	7 cut(s)	100, 139, 256, 266, 276, 303, 327
SfaNI	GCATC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	334
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	159, 239, 270
Tru9I	TTAA	3 cut(s)	159, 239, 270
Tth111I	GACNNNGTC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.