Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

55194788 .. 55196396

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG328600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTTCGCTCCAGCTTTACCTTCCATTCTCCACCGGTCCATCTCTACCCAATTTCCGGTTCAGACGCACTCCGGTCCGATCCTCCAGCGAGCGGCAGGCTCTCTTCAACCGCATTGCCCCTGTCTACGACAACTTAAATGATTTGCTGAGCTTGGGTCAGCACAGAATCTGGAAAAGAATGGCTGTGTCATGGAGTGGTGCAAAAATGGGTGATAGTGTATTGGATTTGTGCTGTGGAAGTGGGGATATAGCGTTTCTGTTGTCTGAGAAAGTTGAGGTCAATGGCAAGGTGATTGGTTTGGATTTTTCAAAAGAGCAGTTATCGGTTGCGTCTTCCCGGCAGAAGGTGAAGTCCAAAGCCTGCTACATGAACATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

127

Amino Acids

14.18

Weight (kDa)

9.51

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	32 - 126	2.5e-25	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	70 - 116	1.4e-10	Methyltransferase domain
Methyltransf_25	PF13649	74 - 116	5.6e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	94, 112
AclWI	GGATC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	57, 93, 346
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	109, 312
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	16, 153
AluI	AGCT	2 cut(s)	16, 153
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	171
AsiGI	ACCGGT	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	38, 76
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	224, 304, 361
AvaII	GGWCC	2 cut(s)	38, 76
BbsI	GAAGAC	1 cut(s)	327
BccI	CCATC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	38, 76
BmgT120I	GGNCC	2 cut(s)	38, 76
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	340
BsaWI	WCCGGW	3 cut(s)	35, 57, 73
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 93, 346
Bse118I	RCCGGY	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	57, 93, 346
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	140, 258
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	36, 58, 74, 340
BslI	CCNNNNNNNGG	3 cut(s)	57, 93, 346
Bsp143I	GATC	1 cut(s)	80
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	94, 112
BspCNI	CTCAG	2 cut(s)	141, 259
BspPI	GGATC	1 cut(s)	75
BsrBI	CCGCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	92, 99, 364
BstDEI	CTNAG	2 cut(s)	149, 267
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	92, 99, 364
CaiI	CAGNNNCTG	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	38, 76
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	2 cut(s)	75, 321
CspAI	ACCGGT	1 cut(s)	35
CspI	CGGWCCG	1 cut(s)	76
CviAII	CATG	2 cut(s)	192, 370
CviJI	RGCY	6 cut(s)	5, 16, 101, 153, 185, 362
CviKI_1	RGCY	6 cut(s)	5, 16, 101, 153, 185, 362
DdeI	CTNAG	2 cut(s)	149, 267
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	38, 76
FaeI	CATG	2 cut(s)	195, 373
FaiI	YATR	3 cut(s)	193, 251, 371
FatI	CATG	2 cut(s)	191, 369
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	4 cut(s)	36, 58, 74, 340
HgaI	GACGC	2 cut(s)	75, 321
Hin1II	CATG	2 cut(s)	195, 373
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	4 cut(s)	36, 58, 74, 340
HphI	GGTGA	3 cut(s)	224, 304, 361
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	65, 80, 268
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	32, 340
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	149, 267
Hsp92II	CATG	2 cut(s)	195, 373
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	15
MalI	GATC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	1 cut(s)	80
MboII	GAAGA	2 cut(s)	97, 327
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	2 cut(s)	94, 271
MseI	TTAA	1 cut(s)	137
MspI	CCGG	4 cut(s)	36, 58, 74, 340
MspR9I	CCNGG	1 cut(s)	340
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	195, 373
PfeI	GAWTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	38, 76
PstNI	CAGNNNCTG	1 cut(s)	171
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	2 cut(s)	38, 76
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	6 cut(s)	18, 24, 155, 282, 294, 351
SinI	GGWCC	2 cut(s)	38, 76
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	94, 112
StyD4I	CCNGG	1 cut(s)	338
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	38, 76
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.