Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

27617840 .. 27618879

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTTGCTCCTTCCATTCTCCACCGGTTCATCTCTACCCAATTTCCGGTTCAGACGCACTCCGCTCCGATCCTCCAGCGAACGACAGGCTCTCTTTAACCGCGTTGCTCCTTTCTACGACAATTTAACTGATTTGTTGAGCTTGGGTCAGCACAGAATATGGAAAAGAATGTCTGTTTCATGGAGTGGTGCAAAAATGGGTGATAGTGTATTGGATCTGTGCTGTGGAAGTGGAGATGTAACGTTTCTATTGTCTGAGAAAGTTGAGGTCGAAGGCAAGGTGATTGGTTTGGATTATGCGAAAGATCAGTTATCAGTTGCGTCTTCCCGGCAAAAGTTGAAGTCCAAAGCCTGCTACATGAACATTGAGTGGGTCGTAGGTGATGCACTTGATTTGCCATTTAGTAATGGTCATTTTGATGCTATAACTATGGGTTACGGGCTGCGAAATGTAGTAGACAAACATAAGGCAATGAAGGAAATCTGTAGAGTTTTGAAAGCAGGTTTTGTTCTCTTCCTTTCTCACTCCAATGGAATTGAAGTTTTATGTTGTTTACAGTGTATATATATGTCGGGAGCCCTTCTACTGAGGACCCTTAAGTTGAGGACTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

206

Amino Acids

22.95

Weight (kDa)

9.23

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	30 - 173	9.7e-44	ubiE/COQ5 methyltransferase family
PCMT	PF01135	64 - 150	2.9e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_23	PF13489	66 - 176	6.3e-08	Methyltransferase domain
Methyltransf_31	PF13847	68 - 178	9.3e-20	Methyltransferase domain
Methyltransf_25	PF13649	71 - 169	2e-19	Methyltransferase domain
Methyltransf_11	PF08241	72 - 170	2.2e-17	Methyltransferase domain
Methyltransf_12	PF08242	72 - 169	3.2e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	65, 103
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	2 cut(s)	66, 225
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	599
AgeI	ACCGGT	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	343, 499, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
AlwI	GGATC	2 cut(s)	66, 225
ApeKI	GCWGC	1 cut(s)	445
AsiGI	ACCGGT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	215, 295, 395
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	487
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	580, 596
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	376, 412
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	331
BsaWI	WCCGGW	2 cut(s)	26, 48
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	249, 581
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	27, 49, 331
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	71, 217, 307
BspACI	CCGC	2 cut(s)	65, 103
BspCNI	CTCAG	2 cut(s)	250, 582
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	580, 596
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	66, 225
BspTI	CTTAAG	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	3 cut(s)	71, 217, 307
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	521
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	258, 590
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	74, 220, 310
BstMBI	GATC	3 cut(s)	71, 217, 307
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	594
CseI	GACGC	2 cut(s)	66, 312
CspAI	ACCGGT	1 cut(s)	26
CviAII	CATG	2 cut(s)	183, 361
CviJI	RGCY	6 cut(s)	5, 92, 144, 353, 445, 581
CviKI_1	RGCY	6 cut(s)	5, 92, 144, 353, 445, 581
DdeI	CTNAG	2 cut(s)	258, 590
DpnI	GATC	3 cut(s)	73, 219, 309
DpnII	GATC	3 cut(s)	71, 217, 307
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	2 cut(s)	186, 364
FatI	CATG	2 cut(s)	182, 360
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	446
GluI	GCNGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	61
HapII	CCGG	3 cut(s)	27, 49, 331
HgaI	GACGC	2 cut(s)	66, 312
Hin1II	CATG	2 cut(s)	186, 364
HpaII	CCGG	3 cut(s)	27, 49, 331
HphI	GGTGA	3 cut(s)	215, 295, 395
Hpy166II	GTNNAC	2 cut(s)	460, 557
Hpy188I	TCNGA	3 cut(s)	56, 71, 259
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	2 cut(s)	460, 557
HpyAV	CCTTC	4 cut(s)	23, 269, 472, 593
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	194, 389
HpyF3I	CTNAG	2 cut(s)	258, 590
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	186, 364
Kzo9I	GATC	3 cut(s)	71, 217, 307
LmnI	GCTCC	4 cut(s)	15, 72, 115, 578
LpnPI	CCDG	7 cut(s)	40, 62, 74, 91, 344, 367, 489
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	2 cut(s)	376, 412
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	241, 437
MalI	GATC	3 cut(s)	73, 219, 309
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	3 cut(s)	71, 217, 307
MboII	GAAGA	2 cut(s)	318, 508
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	3 cut(s)	43, 124, 537
MnlI	CCTC	4 cut(s)	85, 262, 585, 600
MseI	TTAA	3 cut(s)	99, 128, 600
MslI	CAYNNNNRTG	2 cut(s)	420, 531
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	3 cut(s)	27, 49, 331
MspR9I	CCNGG	1 cut(s)	331
MvnI	CGCG	1 cut(s)	105
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	71, 217, 307
NlaIII	CATG	2 cut(s)	186, 364
NlaIV	GGNNCC	2 cut(s)	580, 596
PinAI	ACCGGT	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	580, 596
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	420, 531
SaqAI	TTAA	3 cut(s)	99, 128, 600
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	71, 217, 307
Sau96I	GGNCC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	6 cut(s)	146, 248, 273, 285, 385, 508
SfaNI	GCATC	2 cut(s)	376, 412
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	2 cut(s)	420, 531
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	43, 124, 537
SsiI	CCGC	2 cut(s)	65, 103
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	43, 124, 537
Tru1I	TTAA	3 cut(s)	99, 128, 600
Tru9I	TTAA	3 cut(s)	99, 128, 600
TscAI	CASTG	1 cut(s)	566
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	4 cut(s)	21, 171, 377, 491
TspRI	CASTG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.