Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

26176310 .. 26178086

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCCATCATGTACTGGATTGCGACTCTCTGATCCGATCACTGAGTCTCACAAAAAAGCTCTATCTCTGTTTTAATGTGTCAGCGAAGGAGAAACGAATAGCTGACATGGCTTCGCTTCAGCTTCATCTTCTTCCATTCTCAACCGGTCCATGTCTACCCAGTTCCCGGTTCAGACGCAGTCTGGTCCGATCCTCGACCAAGCGCCAGGCGCTCTTCAACCGCATTGCCCCTGTCTACGATAACTTGAATGATTTGCTGAGCTTGGGTCAGCATCGAATATGGAAAAGAATGGCAGTGTCCTGGAGTGGAGCTAAAAAGGGAGACAGTGTGTTGGATTTGTGCTGTGGAAGTGGGGATTTGGCGTTTCTCTTGTCTGAGAAAGTTGGGTCCAGTGGCAAGGTGATTGGTCTCGATTTCTCGAAAGAGCAGTTATCAGTTGCTTCTTCGCGGCAAAAGTTGATGTCAAAAGCCTTCCACACAAACATTGAGTGGGTTGAAGGTGATGCAATTGATTTGCCATTTTCTGATGGTCACTTTGATGCCATCACTATGGGTTATGGTCTGAGAAATGTAGTAGACAAACATAAGGCCATGCAGGAAATGTATAGAGTTTCAAAAGCAGGCTCAAGAGTATCTATCCTTGACTTTAATAAAAGCATCAATCCAGTTATTGCCTTTACTCAGGAATTGATGATTGACAATGTTGTTGTACCTGTGGCTTCTGGTTTTGGCCTTGCAGAGGATTACAAATACTTAAAGAGTTCAATCCGGGAATTTCTGACAGGTAAGGAGTTGGAAGAGCTGGCTCTAGATGTAGGTTTTTCTAATGCCAGATATTATGAGATTGGTGGAAGCCTCATGGGGAACTTAGTAGCCACCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

296

Amino Acids

32.71

Weight (kDa)

8.99

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	157, 237, 579
AccII	CGCG	1 cut(s)	451
AciI	CCGC	2 cut(s)	223, 451
AclWI	GGATC	2 cut(s)	28, 186
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	15, 714
AfiI	CCNNNNNNNGG	2 cut(s)	168, 742
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	5 cut(s)	220, 250, 500, 618, 768
AjnI	CCWGG	2 cut(s)	207, 302
AluBI	AGCT	6 cut(s)	61, 104, 124, 264, 314, 805
AluI	AGCT	6 cut(s)	61, 104, 124, 264, 314, 805
Alw26I	GTCTC	3 cut(s)	53, 318, 416
AlwI	GGATC	2 cut(s)	28, 186
AoxI	GGCC	3 cut(s)	3, 591, 733
ApoI	RAATTY	1 cut(s)	776
AsiGI	ACCGGT	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	207, 214
AspS9I	GGNCC	4 cut(s)	4, 149, 187, 390
AsuC2I	CCSGG	2 cut(s)	169, 773
AsuHPI	GGTGA	2 cut(s)	415, 515
AvaII	GGWCC	3 cut(s)	149, 187, 390
BccI	CCATC	3 cut(s)	15, 524, 554
BciT130I	CCWGG	2 cut(s)	209, 304
BcnI	CCSGG	2 cut(s)	169, 773
BcoDI	GTCTC	3 cut(s)	53, 318, 416
BfaI	CTAG	1 cut(s)	812
BfoI	RGCGCY	2 cut(s)	208, 215
BisI	GCNGC	1 cut(s)	452
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	4 cut(s)	169, 209, 304, 773
Bme18I	GGWCC	3 cut(s)	149, 187, 390
BmgT120I	GGNCC	4 cut(s)	4, 149, 187, 390
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	4 cut(s)	169, 209, 304, 773
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	4 cut(s)	283, 496, 532, 669
BmuI	ACTGGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	2 cut(s)	169, 773
BsaI	GGTCTC	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 742
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	4 cut(s)	21, 162, 393, 668
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	209, 304
BseLI	CCNNNNNNNGG	2 cut(s)	168, 742
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	5 cut(s)	35, 251, 369, 557, 698
BseNI	ACTGG	4 cut(s)	21, 162, 393, 668
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	5, 593, 735
BshTI	ACCGGT	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	147, 169, 772
BslI	CCNNNNNNNGG	2 cut(s)	168, 742
BsmAI	GTCTC	3 cut(s)	53, 318, 416
BsnI	GGCC	3 cut(s)	5, 593, 735
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	33, 38, 191
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	223, 451
BspANI	GGCC	3 cut(s)	5, 593, 735
BspCNI	CTCAG	5 cut(s)	36, 252, 370, 558, 697
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	28, 186
BspQI	GCTCTTC	2 cut(s)	221, 795
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	21, 162, 393, 668
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	3 cut(s)	33, 38, 191
Bst2UI	CCWGG	2 cut(s)	209, 304
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	221, 795
BstC8I	GCNNGC	2 cut(s)	625, 807
BstDEI	CTNAG	6 cut(s)	44, 260, 378, 566, 684, 871
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstFNI	CGCG	1 cut(s)	451
BstH2I	RGCGCY	2 cut(s)	208, 215
BstHHI	GCGC	2 cut(s)	207, 214
BstKTI	GATC	3 cut(s)	36, 41, 194
BstMAI	GTCTC	3 cut(s)	53, 318, 416
BstMBI	GATC	3 cut(s)	33, 38, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 211
BstNI	CCWGG	2 cut(s)	209, 304
BstSCI	CCNGG	4 cut(s)	167, 207, 302, 771
BstUI	CGCG	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	5, 593, 735
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	4 cut(s)	41, 303, 334, 400
Cac8I	GCNNGC	2 cut(s)	625, 807
CfoI	GCGC	2 cut(s)	207, 214
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	4, 149, 187, 390
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	14, 713
CspAI	ACCGGT	1 cut(s)	146
CviAII	CATG	5 cut(s)	11, 109, 153, 595, 862
CviQI	GTAC	2 cut(s)	14, 713
DdeI	CTNAG	6 cut(s)	44, 260, 378, 566, 684, 871
DpnI	GATC	3 cut(s)	35, 40, 193
DpnII	GATC	3 cut(s)	33, 38, 191
Eam1104I	CTCTTC	2 cut(s)	221, 795
EarI	CTCTTC	2 cut(s)	221, 795
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	3 cut(s)	149, 187, 390
Eco57I	CTGAAG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	207, 302
FaeI	CATG	5 cut(s)	14, 112, 156, 598, 865
FatI	CATG	5 cut(s)	10, 108, 152, 594, 861
FblI	GTMKAC	3 cut(s)	157, 237, 579
Fnu4HI	GCNGC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	2 cut(s)	206, 213
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	2 cut(s)	208, 215
HaeIII	GGCC	3 cut(s)	5, 593, 735
HapII	CCGG	3 cut(s)	147, 169, 772
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	207, 214
Hin1II	CATG	5 cut(s)	14, 112, 156, 598, 865
Hin6I	GCGC	2 cut(s)	205, 212
HinP1I	GCGC	2 cut(s)	205, 212
HinfI	GANTC	2 cut(s)	26, 46
HpaII	CCGG	3 cut(s)	147, 169, 772
HphI	GGTGA	2 cut(s)	415, 515
Hpy166II	GTNNAC	3 cut(s)	158, 238, 580
Hpy188I	TCNGA	8 cut(s)	33, 38, 176, 191, 379, 529, 567, 783
Hpy188III	TCNNGA	5 cut(s)	413, 421, 630, 686, 812
Hpy8I	GTNNAC	3 cut(s)	158, 238, 580
HpyAV	CCTTC	3 cut(s)	82, 484, 494
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	509, 598, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 211
HpyF3I	CTNAG	6 cut(s)	44, 260, 378, 566, 684, 871
Hsp92II	CATG	5 cut(s)	14, 112, 156, 598, 865
HspAI	GCGC	2 cut(s)	205, 212
Kzo9I	GATC	3 cut(s)	33, 38, 191
LguI	GCTCTTC	2 cut(s)	221, 795
LmnI	GCTCC	1 cut(s)	311
LweI	GCATC	4 cut(s)	283, 496, 532, 669
MaeI	CTAG	1 cut(s)	812
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	35, 40, 193
MboI	GATC	3 cut(s)	33, 38, 191
MboII	GAAGA	5 cut(s)	122, 125, 208, 438, 812
MfeI	CAATTG	1 cut(s)	510
MluCI	AATT	3 cut(s)	510, 689, 776
MlyI	GAGTC	2 cut(s)	20, 55
MmeI	TCCRAC	2 cut(s)	315, 777
MnlI	CCTC	3 cut(s)	205, 736, 869
MseI	TTAA	4 cut(s)	75, 651, 758, 886
MslI	CAYNNNNRTG	2 cut(s)	540, 551
MspI	CCGG	3 cut(s)	147, 169, 772
MspR9I	CCNGG	4 cut(s)	169, 209, 304, 773
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	209, 304
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	110, 211
NciI	CCSGG	2 cut(s)	169, 773
NdeII	GATC	3 cut(s)	33, 38, 191
NlaIII	CATG	5 cut(s)	14, 112, 156, 598, 865
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	533
PciSI	GCTCTTC	2 cut(s)	221, 795
PflFI	GACNNNGTC	1 cut(s)	180
PfoI	TCCNGGA	2 cut(s)	302, 771
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	2 cut(s)	20, 54
PpsI	GAGTC	2 cut(s)	20, 54
Psp6I	CCWGG	2 cut(s)	207, 302
PspGI	CCWGG	2 cut(s)	207, 302
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	4 cut(s)	4, 149, 187, 390
PsyI	GACNNNGTC	1 cut(s)	180
RsaI	GTAC	2 cut(s)	15, 714
RsaNI	GTAC	2 cut(s)	14, 713
RseI	CAYNNNNRTG	2 cut(s)	540, 551
SapI	GCTCTTC	2 cut(s)	221, 795
SaqAI	TTAA	4 cut(s)	75, 651, 758, 886
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	33, 38, 191
Sau96I	GGNCC	4 cut(s)	4, 149, 187, 390
SchI	GAGTC	2 cut(s)	20, 55
ScrFI	CCNGG	4 cut(s)	169, 209, 304, 773
SfaNI	GCATC	4 cut(s)	283, 496, 532, 669
SinI	GGWCC	3 cut(s)	149, 187, 390
SmiMI	CAYNNNNRTG	2 cut(s)	540, 551
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	3 cut(s)	510, 689, 776
SsiI	CCGC	2 cut(s)	223, 451
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	4 cut(s)	167, 207, 302, 771
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	4 cut(s)	197, 277, 414, 422
TasI	AATT	3 cut(s)	510, 689, 776
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	454
Tru1I	TTAA	4 cut(s)	75, 651, 758, 886
Tru9I	TTAA	4 cut(s)	75, 651, 758, 886
TscAI	CASTG	4 cut(s)	48, 303, 334, 400
TseFI	GTSAC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	4 cut(s)	48, 303, 334, 400
Tth111I	GACNNNGTC	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	149, 187, 390
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	776
XbaI	TCTAGA	1 cut(s)	811
XmiI	GTMKAC	3 cut(s)	157, 237, 579
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.