Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

12866963 .. 12869268

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGCCCAGAGAACCAACAGGAGGCAGTTTGGTCGACGACAGATCAGGTCACATATATGTGATCGACACAAAAACAGATCCAGAAGCTCCCTCTCTGCATAAAGTTGTTCACCCTGAAGACATCGTACAGAAGACTGGGTTGGCATACCTACACATATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGCATTGCTGGCATATGCCTCATGTTTACTGGGAACTCGTTTTTTTCTGTGGGCTAAAAGGAAAGGAAGAATAATGTCTCAAACAGGTGATTTCAGGGGAGCAAAGGAAAGGGAAAGGTCGGAGCGTCTGGCGTCGAAGGAAACTGTGGAATTGTTAGTGGTGGTCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

130

Amino Acids

14.46

Weight (kDa)

8.62

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	15 - 63	4.5e-13	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	5
ApaI	GGGCCC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	5, 6
AsuHPI	GGTGA	3 cut(s)	104, 191, 317
BaeGI	GKGCMC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbsI	GAAGAC	2 cut(s)	126, 140
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcoDI	GTCTC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	5, 6
BmiI	GGNNCC	2 cut(s)	6, 7
BmrI	ACTGGG	2 cut(s)	147, 257
BmsI	GCATC	1 cut(s)	182
BmuI	ACTGGG	2 cut(s)	147, 257
BpiI	GAAGAC	2 cut(s)	126, 140
BsaHI	GRCGYC	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	142, 252
Bse3DI	GCAATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	142, 252
BseSI	GKGCMC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	44, 63, 79
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	6, 7
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	142, 252
BssMI	GATC	3 cut(s)	44, 63, 79
BssNI	GRCGYC	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	47, 66, 82
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	44, 63, 79
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	9
BstV2I	GAAGAC	2 cut(s)	126, 140
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	5, 6
CseI	GACGC	2 cut(s)	332, 339
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	3 cut(s)	7, 89, 272
CviKI_1	RGCY	3 cut(s)	7, 89, 272
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	46, 65, 81
DpnII	GATC	3 cut(s)	44, 63, 79
Eco24I	GRGCYC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	243
FaiI	YATR	9 cut(s)	56, 58, 60, 102, 148, 158, 232, 234, 241
FatI	CATG	1 cut(s)	239
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	7
HgaI	GACGC	2 cut(s)	332, 339
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	3 cut(s)	104, 191, 317
Hpy166II	GTNNAC	3 cut(s)	37, 112, 245
Hpy188I	TCNGA	2 cut(s)	201, 340
Hpy188III	TCNNGA	2 cut(s)	83, 385
Hpy8I	GTNNAC	3 cut(s)	37, 112, 245
Hpy99I	CGWCG	2 cut(s)	41, 355
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	100, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	44, 63, 79
LmnI	GCTCC	3 cut(s)	94, 317, 340
LweI	GCATC	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	46, 65, 81
MboI	GATC	3 cut(s)	44, 63, 79
MboII	GAAGA	4 cut(s)	131, 145, 178, 297
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	17, 103, 247
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	2 cut(s)	57, 59
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	44, 63, 79
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	2 cut(s)	6, 7
NmuCI	GTSAC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	6, 7
PspOMI	GGGCCC	1 cut(s)	5
PspPI	GGNCC	2 cut(s)	5, 6
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	2 cut(s)	57, 59
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	44, 63, 79
Sau96I	GGNCC	2 cut(s)	5, 6
SchI	GAGTC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	52, 91, 153, 307, 338
SfaNI	GCATC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	57, 59
Sse9I	AATT	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	36, 66, 353
TasI	AATT	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.