Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

34709 .. 36287

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000312.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggcttcgctccagctttaccttccattctccaccggtccatctctacccaatttccggttcagacgcactccgctccgatcctccaacgagcggcaggctctcttcaaccgcattgcccctgtctacgacaacttaaatgatttgctgagcttgggtcagcacagaatctggaaaagaatggctgtgtcatggagtggtgcaaaaatgggtgatagtgtattggatttgtgctgtggaagtggggatatagcgtttctgttgtctgagaaagttgaggtcaatggcaaggtgattggtttggatttttcaaaaaagcagttatcggttgcgtcttcccggcagaaggtgaagtccaaagcctgctacatgaacattgagtgggttgaaggtgatgcacttgatttgccattttctaatggtcaatttgatgctataactatgggttatgggctgcgaaatgtagtagacaaacataaggcaatgcaggaaatttttagagttttgaaagcaggctcaagagtatctatccttgattttaataagagtaccaacccagtaactgcctcatttcaggaattgatgattgacaatgttgttgtccctgtggcttctggttttggccttgaagaggattacaaatacttaaggagatcaatcagggaatttttgacaggggaggagttggagaagctcgctttagatgtaggtttttctgaggcaagatattatgagattggtggaggccttatggggaacttagtagccacccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

258

Amino Acids

28.81

Weight (kDa)

8.68

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	76, 94
AccI	GTMKAC	2 cut(s)	126, 468
AciI	CCGC	4 cut(s)	74, 94, 112, 772
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	492, 665
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
AflII	CTTAAG	1 cut(s)	646
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	109, 312, 389, 508, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	16, 153, 694
AluI	AGCT	3 cut(s)	16, 153, 694
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	2 cut(s)	171, 563
AoxI	GGCC	2 cut(s)	622, 745
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	492, 665
AsiGI	ACCGGT	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	224, 304, 361, 404
AvaII	GGWCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	340
BfrI	CTTAAG	1 cut(s)	646
BisI	GCNGC	2 cut(s)	95, 455
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	96, 456
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	385, 421
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	340
BsaWI	WCCGGW	2 cut(s)	35, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	114, 489
BseLI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
BseMI	GCAATG	2 cut(s)	114, 489
BseMII	CTCAG	3 cut(s)	140, 258, 708
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	624, 747
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	36, 58, 340
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	4 cut(s)	57, 93, 346, 631
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	624, 747
Bsp143I	GATC	2 cut(s)	80, 653
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	4 cut(s)	74, 94, 112, 772
BspANI	GGCC	2 cut(s)	624, 747
BspCNI	CTCAG	3 cut(s)	141, 259, 709
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	646
BsrBI	CCGCTC	2 cut(s)	76, 94
BsrDI	GCAATG	2 cut(s)	114, 489
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	2 cut(s)	80, 653
Bst6I	CTCTTC	2 cut(s)	110, 624
BstAFI	CTTAAG	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	99, 364, 514, 696
BstDEI	CTNAG	4 cut(s)	149, 267, 717, 760
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstKTI	GATC	2 cut(s)	83, 656
BstMBI	GATC	2 cut(s)	80, 653
BstSCI	CCNGG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	624, 747
Cac8I	GCNNGC	4 cut(s)	99, 364, 514, 696
CaiI	CAGNNNCTG	2 cut(s)	171, 563
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	2 cut(s)	75, 321
Csp6I	GTAC	1 cut(s)	549
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	2 cut(s)	192, 370
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	4 cut(s)	149, 267, 717, 760
DpnI	GATC	2 cut(s)	82, 655
DpnII	GATC	2 cut(s)	80, 653
Eam1104I	CTCTTC	2 cut(s)	110, 624
EarI	CTCTTC	2 cut(s)	110, 624
Eco147I	AGGCCT	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	629
FaeI	CATG	2 cut(s)	195, 373
FaiI	YATR	9 cut(s)	193, 251, 371, 437, 443, 450, 477, 732, 752
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	191, 369
FblI	GTMKAC	2 cut(s)	126, 468
Fnu4HI	GCNGC	2 cut(s)	95, 455
Fsp4HI	GCNGC	2 cut(s)	95, 455
GluI	GCNGC	2 cut(s)	95, 455
HaeIII	GGCC	2 cut(s)	624, 747
HapII	CCGG	3 cut(s)	36, 58, 340
HgaI	GACGC	2 cut(s)	75, 321
Hin1II	CATG	2 cut(s)	195, 373
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	3 cut(s)	36, 58, 340
HphI	GGTGA	4 cut(s)	224, 304, 361, 404
Hpy166II	GTNNAC	2 cut(s)	127, 469
Hpy188I	TCNGA	4 cut(s)	65, 80, 268, 718
Hpy188III	TCNNGA	3 cut(s)	172, 519, 575
Hpy8I	GTNNAC	2 cut(s)	127, 469
HpyAV	CCTTC	3 cut(s)	32, 340, 383
HpyCH4V	TGCA	3 cut(s)	203, 398, 487
HpyF3I	CTNAG	4 cut(s)	149, 267, 717, 760
Hsp92II	CATG	2 cut(s)	195, 373
Kzo9I	GATC	2 cut(s)	80, 653
LmnI	GCTCC	2 cut(s)	15, 81
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	2 cut(s)	385, 421
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	82, 655
MbiI	CCGCTC	2 cut(s)	76, 94
MboI	GATC	2 cut(s)	80, 653
MboII	GAAGA	3 cut(s)	97, 327, 641
MluCI	AATT	5 cut(s)	52, 425, 492, 578, 665
MmeI	TCCRAC	2 cut(s)	111, 666
MnlI	CCTC	7 cut(s)	94, 271, 577, 625, 673, 712, 737
MseI	TTAA	3 cut(s)	137, 540, 647
MspCI	CTTAAG	1 cut(s)	646
MspI	CCGG	3 cut(s)	36, 58, 340
MspR9I	CCNGG	1 cut(s)	340
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	80, 653
NlaIII	CATG	2 cut(s)	195, 373
PceI	AGGCCT	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	96, 456
PspPI	GGNCC	1 cut(s)	38
PstNI	CAGNNNCTG	2 cut(s)	171, 563
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	137, 540, 647
SatI	GCNGC	2 cut(s)	95, 455
Sau3AI	GATC	2 cut(s)	80, 653
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	9 cut(s)	18, 24, 155, 282, 294, 351, 394, 696, 712
SfaNI	GCATC	2 cut(s)	385, 421
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	517, 646
SmoI	CTYRAG	2 cut(s)	517, 646
Sse9I	AATT	5 cut(s)	52, 425, 492, 578, 665
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	4 cut(s)	74, 94, 112, 772
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	338
TasI	AATT	5 cut(s)	52, 425, 492, 578, 665
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	137, 540, 647
Tru9I	TTAA	3 cut(s)	137, 540, 647
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	492, 665
XmiI	GTMKAC	2 cut(s)	126, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.