Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

10313434 .. 10322645

Gene Structure 9212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGATCAGGTCGCATATATGTGATCGACACAAAAACAGATCCAGAAGCTCCCTCTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACAGAAGATTGGATTGGCATACCCACTCACATCTCACTGCCTTGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGGTTTCTCAAGCTATATTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCTAAGGCTGCTGGGAGACCATCACCTCTTTTATCGAAAATGTCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

7.76

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	1 - 50	6e-14	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	3 cut(s)	50, 192, 202
AluI	AGCT	3 cut(s)	50, 192, 202
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	152, 251
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	5, 24, 40
BspCNI	CTCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	246
BssMI	GATC	3 cut(s)	5, 24, 40
BstDEI	CTNAG	2 cut(s)	159, 239
BstKTI	GATC	3 cut(s)	8, 27, 43
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	5, 24, 40
BstV1I	GCAGC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	89
CviJI	RGCY	4 cut(s)	50, 192, 202, 244
CviKI_1	RGCY	4 cut(s)	50, 192, 202, 244
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	159, 239
DpnI	GATC	3 cut(s)	7, 26, 42
DpnII	GATC	3 cut(s)	5, 24, 40
Eco31I	GGTCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	99
FaiI	YATR	6 cut(s)	17, 19, 21, 63, 109, 195
Fnu4HI	GCNGC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	157, 212
HphI	GGTGA	2 cut(s)	152, 251
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	61, 134
HpyF3I	CTNAG	2 cut(s)	159, 239
Kzo9I	GATC	3 cut(s)	5, 24, 40
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	57, 90, 123, 233
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	143
MalI	GATC	3 cut(s)	7, 26, 42
MboI	GATC	3 cut(s)	5, 24, 40
MboII	GAAGA	3 cut(s)	92, 106, 139
MflI	RGATCY	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	64, 220, 272
MseI	TTAA	2 cut(s)	167, 198
MslI	CAYNNNNRTG	1 cut(s)	20
NdeII	GATC	3 cut(s)	5, 24, 40
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	167, 198
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	3 cut(s)	5, 24, 40
SchI	GAGTC	1 cut(s)	151
SetI	ASST	7 cut(s)	13, 52, 184, 194, 204, 231, 264
SfaNI	GCATC	1 cut(s)	143
SgeI	CNNG	9 cut(s)	21, 56, 89, 143, 150, 166, 186, 201, 260
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	27, 271
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	167, 198
Tru9I	TTAA	2 cut(s)	167, 198
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.