RchiOBHm_Chr6g0273261

selenium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003403
Physical Location & Seq
Forward (+)
34126076 .. 34129046
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24516

Sequence Viewer

Length: 327 bp
ATGAGGGAATTTTTGACAGGTCACATATATGTGATCGACACAAAAACAGATCCGGAAGCTCCCTCTCTACATAAAGTTGTTGACCCTGAAGACGTCGTACAGAAAATTGGATTGGCATACCCACACACATCTCACTGTCTTGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGGTTTATCCTCTGAGGCTGCTGGGAGACTATCACCTCTTTTATCGAAAATGTCCAACATAACTGTATTTTTTTGTCAAGTCATTGTATCTGATGAACTCTGGCTTGGCCTTGACACCTGCTACCACAGTTTGGAATGA

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

5.02

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 6 - 53 2.1e-14 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
AatII GACGTC 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 319
AccIII TCCGGA 1 cut(s) 52
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 276, 308
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 161, 213
BarI GAAGNNNNNNTAC 2 cut(s) 81, 113
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 182, 192
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 297
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 33, 49
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 181, 193
BspEI TCCGGA 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 44
BssMI GATC 2 cut(s) 33, 49
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 137, 253, 317
BstACI GRCGYC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 168, 201
BstKTI GATC 2 cut(s) 36, 52
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 33, 49
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 4 cut(s) 59, 206, 292, 297
CviKI_1 RGCY 4 cut(s) 59, 206, 292, 297
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 2 cut(s) 168, 201
DpnI GATC 2 cut(s) 35, 51
DpnII GATC 2 cut(s) 33, 49
Eco57I CTGAAG 1 cut(s) 108
FaiI YATR 6 cut(s) 26, 28, 30, 72, 118, 248
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 161, 213
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 171, 202, 280
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 137, 253, 317
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 168, 201
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 33, 49
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 3, 66, 99, 132, 195, 274, 319
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 35, 51
MboI GATC 2 cut(s) 33, 49
MboII GAAGA 2 cut(s) 101, 148
MflI RGATCY 1 cut(s) 49
MluCI AATT 2 cut(s) 8, 105
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 4 cut(s) 73, 196, 208, 234
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 27, 29
MspI CCGG 1 cut(s) 53
NdeII GATC 2 cut(s) 33, 49
NmuCI GTSAC 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 27, 29
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 33, 49
SchI GAGTC 1 cut(s) 160
SetI ASST 6 cut(s) 22, 61, 96, 193, 226, 308
SfaNI GCATC 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 27, 29
Sse9I AATT 2 cut(s) 8, 105
TaaI ACNGT 3 cut(s) 137, 253, 317
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 36, 233
TasI AATT 2 cut(s) 8, 105
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 140
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 319
XapI RAATTY 1 cut(s) 8
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.