Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

27616880 .. 27617691

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGACGAACCAAATCTATTGTCCATCCTTGATTTTAACAAGAGTGCCTACCCAGTAACTTCCTCACAGTCACAGCCCTCACTTCAGGAAATGGTGATTGTCATTGTTGTTGTCCCTGGGGCTTCTCGTTTTGGCCTTGTAGACGACTACAAATACCTAAAGAGATCAATTAGGGAATTTTTGACGGGGGATGAGTTGGAGAAGCTCGCTTTAGATGTAGGGTTTTCGGATGCAAGATATTATGAGATTGCTGGAGGCCTTATGGGGAACTTAGTAGCCACCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

4.62

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	47 - 89	3.3e-06	ubiE/COQ5 methyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AoxI	GGCC	2 cut(s)	133, 256
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	106
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	115, 116
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	115, 116
BseGI	GGATG	3 cut(s)	24, 196, 235
BseNI	ACTGG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	135, 258
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	135, 258
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	2 cut(s)	135, 258
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	115, 116
BssMI	GATC	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	24, 196, 235
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	135, 258
BtsCI	GGATG	3 cut(s)	24, 196, 235
Cac8I	GCNNGC	1 cut(s)	207
CviJI	RGCY	6 cut(s)	76, 122, 135, 205, 258, 278
CviKI_1	RGCY	6 cut(s)	76, 122, 135, 205, 258, 278
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	115
FaiI	YATR	2 cut(s)	243, 263
FaqI	GGGAC	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	3 cut(s)	11, 203, 242
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	135, 258
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	66, 71, 102, 129, 237
LweI	GCATC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	55, 69
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MluCI	AATT	2 cut(s)	168, 176
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	73, 88, 248
MseI	TTAA	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	69
PasI	CCCWGGG	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	2 cut(s)	159, 207
SfaNI	GCATC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	168, 176
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	69
TasI	AATT	2 cut(s)	168, 176
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.