Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Forward (+)

5491141 .. 5492838

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTCGCTTCGGCTTCAACTTCCATTCTCTGCCGGTCCATGCCTACCCAATTCCCGGTTCAGACGCAGTCGGGTCCGGTCCTCCACCGAACGCCAGGCGCTCTTCAACCGCATTGCCCCTGTCTACGATAACTTAAATGATTTGTTGAGCTTGGGTCAACATCGAATATGGAAAAGAATGGCAGTTTCGTGGAGCGGAGCAAAAATGGGGGAGAGTGTGTTGGATTTGTGCTGTGGAAGTGGGGATTTAGCGTTTCTCTTGTCCGAGAAAGTTGGGTCCAATGGCAAGGTGATTGGTCTTGATTTCTCGAAGGAGCAGTTGTCAGTTGCTTCGTCGCGGCAAAAGTTGAAGTCGAAGGCCTGCTACTTGAACATTGAGTGGGTTGAAGGTGATGCAACTGAATTGCCGTTTTCTGACGGTCACTTTGATGCCATCACTATGGGTTATGGGCTAAGAAATGTAGTAGACAAACACAAGGCCATGGAGGAAATTTTTAGAGTTTTGAAAGCAGGCTCAAGGGTATCGATCCTTGACTTCAACAAAAGCACCAATCCAGTTGTTTCATCAGTTCAGGACTTGATGATTGACAATGTTGTTGTCCCCGTGGCATCTGGTTTTGGACTTGAGGAGGATTACAAGTACTTAAAAAGTTCAATCAGGGAATTCCTGACAGGGGACGAGTTGGAGAAGCTGGCTTTAGATGGAGGTTTTTCCAATGCCAAATATTATGAGATTGGTGGAAGCCTCATGGGGAACTTAGTAGCCACCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

259

Amino Acids

28.48

Weight (kDa)

8.28

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	2 cut(s)	126, 468
AccII	CGCG	1 cut(s)	340
AciI	CCGC	3 cut(s)	112, 198, 340
AclWI	GGATC	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	492, 665
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	2 cut(s)	57, 676
AgsI	TTSAA	8 cut(s)	20, 109, 352, 373, 389, 508, 541, 657
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	153, 694
AluI	AGCT	2 cut(s)	153, 694
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	2 cut(s)	360, 480
ApoI	RAATTY	2 cut(s)	492, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	4 cut(s)	38, 76, 81, 279
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	304, 404
AvaII	GGWCC	4 cut(s)	38, 76, 81, 279
BarI	GAAGNNNNNNTAC	2 cut(s)	350, 382
BccI	CCATC	2 cut(s)	443, 698
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	644
Bme1390I	CCNGG	2 cut(s)	58, 98
Bme18I	GGWCC	4 cut(s)	38, 76, 81, 279
BmgT120I	GGNCC	4 cut(s)	38, 76, 81, 279
BmiI	GGNNCC	2 cut(s)	77, 280
BmrFI	CCNGG	2 cut(s)	58, 98
BmsI	GCATC	3 cut(s)	385, 421, 620
BpuEI	CTTGAG	2 cut(s)	502, 647
BpuMI	CCSGG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	483, 606
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 676
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	483, 606
BseLI	CCNNNNNNNGG	2 cut(s)	57, 676
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	362, 482
BshVI	ATCGAT	1 cut(s)	527
BsiSI	CCGG	3 cut(s)	36, 58, 79
BslFI	GGGAC	2 cut(s)	587, 692
BslI	CCNNNNNNNGG	2 cut(s)	57, 676
BsmFI	GGGAC	2 cut(s)	587, 692
BsnI	GGCC	2 cut(s)	362, 482
Bsp143I	GATC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	112, 198, 340
BspANI	GGCC	2 cut(s)	362, 482
BspDI	ATCGAT	1 cut(s)	527
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	77, 280
BspPI	GGATC	1 cut(s)	523
BspQI	GCTCTTC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	483, 606
BssMI	GATC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	364, 514, 696
BstDEI	CTNAG	2 cut(s)	455, 760
BstDSI	CCRYGG	2 cut(s)	483, 606
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	531
BstMBI	GATC	1 cut(s)	528
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	56, 96
BstUI	CGCG	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	442
Bsu15I	ATCGAT	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	362, 482
BsuTUI	ATCGAT	1 cut(s)	527
BtgI	CCRYGG	2 cut(s)	483, 606
Cac8I	GCNNGC	3 cut(s)	364, 514, 696
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	38, 76, 81, 279
ClaI	ATCGAT	1 cut(s)	527
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	3 cut(s)	42, 484, 751
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	455, 760
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	362
Eco47I	GGWCC	4 cut(s)	38, 76, 81, 279
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	3 cut(s)	45, 487, 754
FaiI	YATR	7 cut(s)	43, 172, 443, 450, 485, 732, 752
FaqI	GGGAC	2 cut(s)	587, 692
FatI	CATG	3 cut(s)	41, 483, 750
FblI	GTMKAC	2 cut(s)	126, 468
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	362, 482
HapII	CCGG	3 cut(s)	36, 58, 79
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	45, 487, 754
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HpaII	CCGG	3 cut(s)	36, 58, 79
HphI	GGTGA	2 cut(s)	304, 404
Hpy166II	GTNNAC	3 cut(s)	127, 161, 469
Hpy188I	TCNGA	3 cut(s)	65, 268, 418
Hpy188III	TCNNGA	4 cut(s)	302, 310, 575, 670
Hpy8I	GTNNAC	3 cut(s)	127, 161, 469
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	307, 352, 383
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	455, 760
Hsp92II	CATG	3 cut(s)	45, 487, 754
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	528
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	195, 200, 316
LweI	GCATC	3 cut(s)	385, 421, 620
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	530
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	1 cut(s)	528
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	4 cut(s)	52, 404, 492, 665
MmeI	TCCRAC	2 cut(s)	204, 666
MnlI	CCTC	6 cut(s)	94, 481, 622, 625, 701, 758
MseI	TTAA	2 cut(s)	137, 647
MslI	CAYNNNNRTG	2 cut(s)	429, 440
MspI	CCGG	3 cut(s)	36, 58, 79
MspR9I	CCNGG	2 cut(s)	58, 98
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	340
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	3 cut(s)	45, 487, 754
NlaIV	GGNNCC	2 cut(s)	77, 280
NmuCI	GTSAC	1 cut(s)	422
PceI	AGGCCT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	77, 280
PspPI	GGNCC	4 cut(s)	38, 76, 81, 279
PsyI	GACNNNGTC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	429, 440
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	137, 647
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	4 cut(s)	38, 76, 81, 279
ScaI	AGTACT	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	58, 98
SetI	ASST	5 cut(s)	155, 294, 394, 696, 712
SfaNI	GCATC	3 cut(s)	385, 421, 620
SinI	GGWCC	4 cut(s)	38, 76, 81, 279
SmiMI	CAYNNNNRTG	2 cut(s)	429, 440
SmlI	CTYRAG	2 cut(s)	517, 626
SmoI	CTYRAG	2 cut(s)	517, 626
Sse9I	AATT	4 cut(s)	52, 404, 492, 665
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	3 cut(s)	112, 198, 340
SspI	AATATT	1 cut(s)	728
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	56, 96
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	4 cut(s)	166, 311, 356, 527
TasI	AATT	4 cut(s)	52, 404, 492, 665
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	137, 647
Tru9I	TTAA	2 cut(s)	137, 647
TseFI	GTSAC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	555
Tth111I	GACNNNGTC	1 cut(s)	69
VpaK11BI	GGWCC	4 cut(s)	38, 76, 81, 279
XapI	RAATTY	2 cut(s)	492, 665
XmiI	GTMKAC	2 cut(s)	126, 468
ZrmI	AGTACT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.