Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00906

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

65251 .. 66611

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

CTTGGTCAGCACAGAATCTGGAAAAGAATGGCTGTGTCATGGAGTGGTAAAGTTGTAAACTTTCTCTCATTTTTTTGTTCAGTGATCATCTCTTTTTTTTTTTTTGCAAAAATGGGTGATAGTGTATTGGATTTGTGCTGTGGAAGTGGGGATATAGCGTTTCTGTTGTCTGAGAAAGTTGAGGTCAATGGCAAGGTGATTGGTTTGGATTTTTCAAAAAAGCAGTTATCGGTTGCGTCTTCCCGGCAGAAGGTGAAGTCCAAAGCCTGCTACATGAACATTGTGTGGGTTGAAGGTGATGCACTTGATTTGCCATTTTCTAATGGTCAATTTGATGCTATAACTATGGGTTATGGGCTGCGAAATGTAGTAGACAAACATAAGGCAATGCAGGAAATTTTTAGAGTTTTGAAAGCAGGCTCAAGAGTGTCTATCCTTGATTTTAATAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATGTTGTTGTCCCTGTGGCTTCTGGTTTTGGCCTTGAAGAGGATTACAAATACTTAAGGAGATCAATCAGGGAATTTTTGACAGGGGAGGAGTTGGAGATGCTCGCTTTAGATGTAGGTTTTTCTGATGCAAGATATTATGAGATTGGTGGAGGCCTTATGGGGAACTTAGTAGCCACCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

226

Amino Acids

25.18

Weight (kDa)

7.8

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	31 - 206	2.6e-10	Methyltransferase domain
Ubie_methyltran	PF01209	36 - 220	8.1e-46	ubiE/COQ5 methyltransferase family
PCMT	PF01135	36 - 123	8e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	39 - 154	3.7e-22	Methyltransferase domain
Methyltransf_25	PF13649	42 - 140	1.1e-19	Methyltransferase domain
Methyltransf_11	PF08241	43 - 143	6.2e-18	Methyltransferase domain
Methyltransf_12	PF08242	43 - 142	2.5e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	396, 569
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	250, 535
AflII	CTTAAG	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	216, 293, 412, 533
AlwNI	CAGNNNCTG	2 cut(s)	18, 467
AoxI	GGCC	2 cut(s)	526, 649
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	396, 569
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	4 cut(s)	128, 208, 265, 308
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	550
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	4 cut(s)	289, 325, 585, 613
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 535
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	250, 535
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	2 cut(s)	528, 651
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	250, 535
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	528, 651
Bsp143I	GATC	2 cut(s)	84, 557
BspACI	CCGC	1 cut(s)	676
BspANI	GGCC	2 cut(s)	528, 651
BspCNI	CTCAG	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	84, 557
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	268, 418, 600
BstDEI	CTNAG	2 cut(s)	171, 664
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstKTI	GATC	2 cut(s)	87, 560
BstMBI	GATC	2 cut(s)	84, 557
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	528, 651
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	268, 418, 600
CaiI	CAGNNNCTG	2 cut(s)	18, 467
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	39, 274
CviJI	RGCY	8 cut(s)	32, 266, 358, 420, 515, 528, 651, 671
CviKI_1	RGCY	8 cut(s)	32, 266, 358, 420, 515, 528, 651, 671
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	171, 664
DpnI	GATC	2 cut(s)	86, 559
DpnII	GATC	2 cut(s)	84, 557
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	651
EcoNI	CCTNNNNNAGG	1 cut(s)	533
FaeI	CATG	2 cut(s)	42, 277
FaiI	YATR	9 cut(s)	40, 155, 275, 341, 347, 354, 381, 636, 656
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	38, 273
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	528, 651
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	42, 277
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	4 cut(s)	128, 208, 265, 308
Hpy166II	GTNNAC	2 cut(s)	58, 373
Hpy188I	TCNGA	2 cut(s)	172, 622
Hpy188III	TCNNGA	3 cut(s)	19, 423, 479
Hpy8I	GTNNAC	2 cut(s)	58, 373
HpyAV	CCTTC	2 cut(s)	244, 287
HpyCH4V	TGCA	4 cut(s)	107, 302, 391, 626
HpyF3I	CTNAG	2 cut(s)	171, 664
Hsp92II	CATG	2 cut(s)	42, 277
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	84, 557
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	4 cut(s)	289, 325, 585, 613
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	86, 559
MboI	GATC	2 cut(s)	84, 557
MboII	GAAGA	2 cut(s)	231, 545
MluCI	AATT	3 cut(s)	329, 396, 569
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	5 cut(s)	175, 481, 529, 577, 641
MseI	TTAA	2 cut(s)	444, 551
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	244
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	84, 557
NlaIII	CATG	2 cut(s)	42, 277
PceI	AGGCCT	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	360
PstNI	CAGNNNCTG	2 cut(s)	18, 467
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	444, 551
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	84, 557
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	5 cut(s)	186, 198, 255, 298, 616
SfaNI	GCATC	4 cut(s)	289, 325, 585, 613
SmlI	CTYRAG	2 cut(s)	421, 550
SmoI	CTYRAG	2 cut(s)	421, 550
Sse9I	AATT	3 cut(s)	329, 396, 569
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	1 cut(s)	676
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	242
TasI	AATT	3 cut(s)	329, 396, 569
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	444, 551
Tru9I	TTAA	2 cut(s)	444, 551
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	550
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	2 cut(s)	396, 569
XmiI	GTMKAC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.