Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Reverse (-)

26865298 .. 26867694

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACAAATGTGAAGTTTGAGGTGAAGTCGGCGAGTTTTCCGGTGGAGTTTTGGCGGAGGAGGAAGGGGGGAGCGAGTAGAAAGAAAGGCACCGACACTCCCATTTCCAAGACGCTGAAAAGGATGAAGGGTCGCCTGAAAGTGATGAATATTCCTGACATTGATGCCACTCAAGATATTTCCAATGGTACTTCTACTGAGTTATCAGTTGCTTCTTTCCGGCAGAAGTTGAAGTCCAAAGCCTGCTACATGAACATTGAGATTTTGAATGCAGGCTCAAGAGTGTCCATCCTTGATCTTAACAAGAGTACCAACCCAGTAACTGCCTCATTTCAGGAAATGATGATTGACAATATTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGGAGAGGATTATAATTACTTAAGGAGATCAATCAGAGAATTTTTGACAGGGGAGGAGTTGGAGAAGCTCGCTTTAGATGTAGGTTTTTCTGATGCAAGATATTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

166

Amino Acids

18.56

Weight (kDa)

9.46

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	85 - 164	4.8e-06	ubiE/COQ5 methyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	2 cut(s)	190, 310
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflII	CTTAAG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	232, 268
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	382
ApoI	RAATTY	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	34
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BanI	GGYRCC	1 cut(s)	89
BccI	CCATC	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	154, 469
BmuI	ACTGGG	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	156, 262
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	317, 375
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	129, 288
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	317, 375
BseRI	GAGGAG	2 cut(s)	73, 455
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	41, 220
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	295, 413
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	317, 375
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	295, 413
BssT1I	CCWWGG	1 cut(s)	385
BstAFI	CTTAAG	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	244, 274, 456
BstDEI	CTNAG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	129, 288
BstKTI	GATC	2 cut(s)	298, 416
BstMBI	GATC	2 cut(s)	295, 413
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	129, 288
Cac8I	GCNNGC	3 cut(s)	244, 274, 456
CaiI	CAGNNNCTG	1 cut(s)	323
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	189, 309
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	242, 276, 371, 384, 454
CviKI_1	RGCY	5 cut(s)	242, 276, 371, 384, 454
CviQI	GTAC	2 cut(s)	189, 309
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	297, 415
DpnII	GATC	2 cut(s)	295, 413
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	251, 399, 492
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	1 cut(s)	249
FokI	GGATG	2 cut(s)	136, 275
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	2 cut(s)	41, 220
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	253
HpaII	CCGG	2 cut(s)	41, 220
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	422, 478
Hpy188III	TCNNGA	4 cut(s)	155, 173, 279, 335
HpyAV	CCTTC	2 cut(s)	58, 121
HpyCH4V	TGCA	2 cut(s)	272, 482
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	295, 413
LmnI	GCTCC	1 cut(s)	71
LweI	GCATC	2 cut(s)	154, 469
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	297, 415
MboI	GATC	2 cut(s)	295, 413
MluCI	AATT	2 cut(s)	400, 425
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	13, 51, 54, 337, 385, 433
MseI	TTAA	3 cut(s)	300, 407, 496
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	2 cut(s)	41, 220
Mva1269I	GAATGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	295, 413
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	91
PctI	GAATGC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	190, 310
RsaNI	GTAC	2 cut(s)	189, 309
SaqAI	TTAA	3 cut(s)	300, 407, 496
Sau3AI	GATC	2 cut(s)	295, 413
SetI	ASST	3 cut(s)	24, 456, 472
SfaNI	GCATC	2 cut(s)	154, 469
SmlI	CTYRAG	3 cut(s)	171, 277, 406
SmoI	CTYRAG	3 cut(s)	171, 277, 406
Sse9I	AATT	2 cut(s)	400, 425
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	2 cut(s)	151, 355
StyI	CCWWGG	1 cut(s)	385
TasI	AATT	2 cut(s)	400, 425
Tru1I	TTAA	3 cut(s)	300, 407, 496
Tru9I	TTAA	3 cut(s)	300, 407, 496
TspDTI	ATGAA	3 cut(s)	140, 161, 266
Vha464I	CTTAAG	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.