Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Forward (+)

39106467 .. 39107776

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGATTGACTATGTTGTTGTCCCTGTGGCTTCCAGTTTTGGCCTTGAAGAGGATTATAAATACTTGACGAGATCAATCAGGGAATTTTTGACAGGTCGCATATATGTGATCGACACAAAAACAGATCCAGAAGCTCCCTCTCTGCATAAAGTTGTTGACCCTGAAGACATCGTACAGAAGATTGGATTGGCATACCCACACACATCTCATTGCCTTGCATCTGGTGATTTCTTCTCCTTGACTCAGAGTTTAATGTCAAGGGAAGGTTTATCGTCTGGGAGACTGTCACCTCTTTTATCGAAACTGTCCAAGATAACTGTATTTCTTTGTCAAGTCATTGTATCTGATGAACTCTGGCTTGGCCTTGACACCTGCTACCACAGGTGTGTGGAATTTTTCCGTTTCTTTTACTCAACATGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

142

Amino Acids

16.24

Weight (kDa)

5.76

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP56	PF05694	31 - 95	4.7e-15	56kDa selenium binding protein (SBP56)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	86, 395
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 345, 377
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	43, 364
ApoI	RAATTY	2 cut(s)	86, 395
AsuHPI	GGTGA	2 cut(s)	239, 282
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	383
BmsI	GCATC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	45, 366
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	45, 366
Bsp143I	GATC	3 cut(s)	74, 111, 127
BspANI	GGCC	2 cut(s)	45, 366
BspCNI	CTCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	74, 111, 127
Bst4CI	ACNGT	3 cut(s)	288, 309, 322
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	77, 114, 130
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	74, 111, 127
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	45, 366
BveI	ACCTGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	420
CviJI	RGCY	5 cut(s)	32, 45, 137, 361, 366
CviKI_1	RGCY	5 cut(s)	32, 45, 137, 361, 366
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	76, 113, 129
DpnII	GATC	3 cut(s)	74, 111, 127
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	423
FaiI	YATR	8 cut(s)	15, 60, 104, 106, 108, 150, 196, 421
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	45, 366
Hin1II	CATG	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	2 cut(s)	239, 282
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	249, 349
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	3 cut(s)	288, 309, 322
HpyCH4V	TGCA	2 cut(s)	148, 221
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	74, 111, 127
LmnI	GCTCC	1 cut(s)	142
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	3 cut(s)	76, 113, 129
MboI	GATC	3 cut(s)	74, 111, 127
MboII	GAAGA	4 cut(s)	62, 179, 193, 226
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	2 cut(s)	86, 395
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	46, 151, 303
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	107, 387
NdeII	GATC	3 cut(s)	74, 111, 127
NlaIII	CATG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	288
OliI	CACNNNNGTG	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	107, 387
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	74, 111, 127
SchI	GAGTC	1 cut(s)	238
SetI	ASST	6 cut(s)	100, 139, 271, 295, 377, 389
SfaNI	GCATC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	107, 387
Sse9I	AATT	2 cut(s)	86, 395
TaaI	ACNGT	3 cut(s)	288, 309, 322
TaqI	TCGA	2 cut(s)	114, 302
TasI	AATT	2 cut(s)	86, 395
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	86, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.