Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Forward (+)

5590402 .. 5595199

Gene Structure 4798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTTCACTTCAGTTACATCTTCCATTCTCAACCAGTCCACGCCTACCCATTTCCCGGTTTAGACGCAGTTCGGTCCGGTCCTTCACTGAACGCCAGACATTCTTCAACCGCATTGCCCCTGTCTACGATAACTTTTGGTTAAATGATCTATTGAGCTTGGGTCAGCATCGAATATGGAAAAGAATGGCATTTTTGTTGAGTGGAGCAAAAATCGGAGAGAGTGTGTTGGATTTGTGCTGTGGAATTGGGGATTTAGCGTTTCTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

10.26

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	76, 81
AsuC2I	CCSGG	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	76, 81
BcnI	CCSGG	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	76, 81
BmgT120I	GGNCC	2 cut(s)	76, 81
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	58, 79
BslI	CCNNNNNNNGG	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	76, 81
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	76
CviJI	RGCY	2 cut(s)	5, 159
CviKI_1	RGCY	2 cut(s)	5, 159
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	76, 81
FaiI	YATR	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	126
HapII	CCGG	2 cut(s)	58, 79
HgaI	GACGC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	58, 79
Hpy166II	GTNNAC	2 cut(s)	41, 127
Hpy188I	TCNGA	2 cut(s)	218, 272
Hpy8I	GTNNAC	2 cut(s)	41, 127
HpyAV	CCTTC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	49, 71, 92, 110, 135
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	14, 97
MluCI	AATT	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	143
MspI	CCGG	2 cut(s)	58, 79
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	76, 81
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	76, 81
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	178
SgeI	CNNG	8 cut(s)	48, 54, 69, 70, 91, 109, 134, 172
SinI	GGWCC	2 cut(s)	76, 81
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	76, 81
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.