AT1G24240

ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003350
Physical Location & Seq
Forward (+)
8586335 .. 8588180
1846 bp
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UTR
Exon/CDS
Intron
AT1G24240.1

Sequence Viewer

Length: 669 bp
ATGCAATTGATTCGTGGCAGTACAAGGTTGCTTCAGAGGCATCGTTTCTCCATCTCCAACACTCTTCCTTTCACTTCTTCTTCTTGTGGAAGCTGGTCTGCTAATGAATCGAGGAAGCTAGGCTTTGATTCTTTCCCTAGTACTAGAGCTGCGACATATCTCATTAGCTCGTTGAAAAATGCCGGCTTTTCCTCTTTGGCAGTAGTACCTAAACAAAACTTTTCGTCGAGGTGTTTTTCCACCACTGGAGATTCTGTTCAAGGATCCCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTAAGCATATTATGCAGATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAAGAGGCGTGTATCAATCGTAAAAGGCGTCGTCATAGCAAGGCGTAATGCTGGTCTCAACTCAACATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGCGTCGAATCCATGTTCCCCTTGTATTCCCCAAACCTGAGGGTGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGAGCCAAGCTTTATTACCTCAGGGAAAAGGTCAATGCTCTCAAGAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

222

Amino Acids

25.07

Weight (kDa)

10.62

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 120 - 216 1.5e-29 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AciI CCGC 2 cut(s) 310, 324
AclWI GGATC 2 cut(s) 258, 271
AcuI CTGAAG 1 cut(s) 17
AcyI GRCGYC 2 cut(s) 471, 543
AfaI GTAC 3 cut(s) 22, 142, 207
AgsI TTSAA 2 cut(s) 175, 260
AjnI CCWGG 1 cut(s) 403
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 93, 118, 149, 168, 421, 625
AluI AGCT 6 cut(s) 93, 118, 149, 168, 421, 625
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 2 cut(s) 258, 271
ApeKI GCWGC 2 cut(s) 149, 418
AsuHPI GGTGA 1 cut(s) 595
AxyI CCTNAGG 2 cut(s) 578, 635
BamHI GGATCC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 136, 430
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 3 cut(s) 119, 138, 144
BisI GCNGC 3 cut(s) 150, 311, 419
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 151, 312, 420
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 2 cut(s) 267, 555
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 641
BsaHI GRCGYC 2 cut(s) 471, 543
BsaI GGTCTC 1 cut(s) 503
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 528, 558
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 250
Bse21I CCTNAGG 2 cut(s) 578, 635
BseBI CCWGG 1 cut(s) 405
BseMII CTCAG 5 cut(s) 261, 305, 429, 569, 649
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 136, 430
BsgI GTGCAG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 503
Bso31I GGTCTC 1 cut(s) 503
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 2 cut(s) 310, 324
BspCNI CTCAG 5 cut(s) 262, 304, 430, 570, 648
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 2 cut(s) 258, 271
BspQI GCTCTTC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 182
BssMI GATC 1 cut(s) 263
BssNI GRCGYC 2 cut(s) 471, 543
Bst2UI CCWGG 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 69, 610
BstACI GRCGYC 2 cut(s) 471, 543
BstAPI GCANNNNNTGC 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 7 cut(s) 270, 291, 327, 380, 438, 578, 635
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 37, 337
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 136, 430
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Bsu36I CCTNAGG 2 cut(s) 578, 635
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 182
CseI GACGC 2 cut(s) 460, 532
Csp6I GTAC 3 cut(s) 21, 141, 206
CviAII CATG 1 cut(s) 553
CviQI GTAC 3 cut(s) 21, 141, 206
DdeI CTNAG 7 cut(s) 270, 291, 327, 380, 438, 578, 635
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eam1104I CTCTTC 2 cut(s) 69, 610
EarI CTCTTC 2 cut(s) 69, 610
Eco31I GGTCTC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 17
Eco81I CCTNAGG 2 cut(s) 578, 635
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 556
FaiI YATR 5 cut(s) 157, 333, 338, 479, 554
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 552
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 150, 311, 419
Fsp4HI GCNGC 3 cut(s) 150, 311, 419
FspBI CTAG 3 cut(s) 119, 138, 144
GluI GCNGC 3 cut(s) 150, 311, 419
GsuI CTGGAG 2 cut(s) 267, 555
HapII CCGG 1 cut(s) 183
HgaI GACGC 2 cut(s) 460, 532
Hin1I GRCGYC 2 cut(s) 471, 543
Hin1II CATG 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 8 cut(s) 10, 107, 128, 251, 272, 297, 388, 548
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 2 cut(s) 349, 598
Hpy188I TCNGA 3 cut(s) 36, 277, 294
Hpy188III TCNNGA 2 cut(s) 392, 658
Hpy8I GTNNAC 2 cut(s) 349, 598
Hpy99I CGWCG 3 cut(s) 229, 476, 548
HpyAV CCTTC 1 cut(s) 516
HpyCH4V TGCA 3 cut(s) 4, 340, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 337
HpyF3I CTNAG 7 cut(s) 270, 291, 327, 380, 438, 578, 635
Hsp92I GRCGYC 2 cut(s) 471, 543
Hsp92II CATG 1 cut(s) 556
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 263
LguI GCTCTTC 1 cut(s) 610
Lsp1109I GCAGC 2 cut(s) 136, 430
LweI GCATC 1 cut(s) 49
MaeI CTAG 3 cut(s) 119, 138, 144
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 5 cut(s) 56, 69, 72, 616, 627
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 263
MluCI AATT 2 cut(s) 5, 516
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 30, 105, 202, 222, 300, 358, 441, 573, 644
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 3 cut(s) 306, 588, 667
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 5
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 37, 337
NaeI GCCGGC 1 cut(s) 184
NdeII GATC 1 cut(s) 263
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 7 cut(s) 10, 107, 128, 251, 297, 388, 548
PkrI GCNGC 3 cut(s) 151, 312, 420
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 3 cut(s) 22, 142, 207
RsaNI GTAC 3 cut(s) 21, 141, 206
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 306, 588, 667
SatI GCNGC 3 cut(s) 150, 311, 419
Sau3AI GATC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 405
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 2 cut(s) 5, 516
SsiI CCGC 2 cut(s) 310, 324
SspMI CTAG 3 cut(s) 119, 138, 144
StyD4I CCNGG 1 cut(s) 403
TaqI TCGA 3 cut(s) 110, 227, 546
TasI AATT 2 cut(s) 5, 516
TatI WGTACW 2 cut(s) 20, 140
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 7 cut(s) 10, 107, 128, 251, 297, 388, 548
Tru1I TTAA 3 cut(s) 306, 588, 667
Tru9I TTAA 3 cut(s) 306, 588, 667
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 149, 418
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 3 cut(s) 119, 138, 144
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.