Rh1DG152300

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003350
Physical Location & Seq
Reverse (-)
31795743 .. 31798659
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG152300.1

Sequence Viewer

Length: 576 bp
ATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTGGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAACAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCTCTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

10.28

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 95 - 186 4.8e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 39, 42, 57, 202, 355, 520
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 3 cut(s) 177, 373, 455
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 68, 187, 266, 532
AluI AGCT 4 cut(s) 68, 187, 266, 532
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 90, 140
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 525
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 90, 140
BfaI CTAG 2 cut(s) 254, 434
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 4 cut(s) 40, 58, 117, 356
BlsI GCNGC 4 cut(s) 41, 59, 118, 357
Bme1390I CCNGG 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 153, 548
BsaI GGTCTC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 4 cut(s) 135, 174, 343, 556
BseNI ACTGG 1 cut(s) 507
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 161
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 90, 140
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 2 cut(s) 119, 562
BsnI GGCC 1 cut(s) 527
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 137, 161
BspACI CCGC 6 cut(s) 39, 42, 57, 202, 355, 520
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 4 cut(s) 136, 175, 342, 555
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 244
BstDEI CTNAG 4 cut(s) 144, 183, 329, 542
BstFNI CGCG 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 90, 140
BstMWI GCNNNNNNNGC 2 cut(s) 122, 244
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 527
BtrI CACGTC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 525
Csp6I GTAC 1 cut(s) 341
CviAII CATG 1 cut(s) 111
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 4 cut(s) 144, 183, 329, 542
DraI TTTAAA 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 1 cut(s) 114
FaiI YATR 6 cut(s) 65, 112, 242, 305, 318, 485
FaqI GGGAC 1 cut(s) 560
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 40, 58, 117, 356
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 40, 58, 117, 356
FspBI CTAG 2 cut(s) 254, 434
GluI GCNGC 4 cut(s) 40, 58, 117, 356
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 1 cut(s) 527
Hin1II CATG 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 5 cut(s) 173, 250, 423, 444, 455
Hpy188I TCNGA 3 cut(s) 23, 332, 422
Hpy188III TCNNGA 5 cut(s) 170, 254, 370, 427, 565
HpyCH4IV ACGT 2 cut(s) 155, 394
HpyCH4V TGCA 4 cut(s) 119, 194, 247, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 244
HpyF3I CTNAG 4 cut(s) 144, 183, 329, 542
HpySE526I ACGT 2 cut(s) 155, 394
Hsp92II CATG 1 cut(s) 114
LmnI GCTCC 2 cut(s) 23, 65
LpnPI CCDG 9 cut(s) 33, 297, 312, 324, 387, 412, 426, 488, 529
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 181, 213
MaeI CTAG 2 cut(s) 254, 434
MaeII ACGT 2 cut(s) 155, 394
MboII GAAGA 1 cut(s) 523
MhlI GDGCHC 2 cut(s) 137, 161
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 453
MnlI CCTC 5 cut(s) 207, 210, 273, 423, 516
MseI TTAA 2 cut(s) 213, 407
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 312
MssI GTTTAAAC 1 cut(s) 408
Mva1269I GAATGC 2 cut(s) 119, 562
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 122, 244
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 61
PctI GAATGC 2 cut(s) 119, 562
PfeI GAWTC 4 cut(s) 173, 250, 423, 455
PkrI GCNGC 4 cut(s) 41, 59, 118, 357
PleI GAGTC 1 cut(s) 452
PmeI GTTTAAAC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 525
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 213, 407
SatI GCNGC 4 cut(s) 40, 58, 117, 356
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 137, 161
SetI ASST 8 cut(s) 70, 158, 189, 199, 268, 301, 397, 534
SfaNI GCATC 2 cut(s) 181, 213
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 168, 563
SmoI CTYRAG 2 cut(s) 168, 563
Sse9I AATT 1 cut(s) 209
SsiI CCGC 6 cut(s) 39, 42, 57, 202, 355, 520
SspMI CTAG 2 cut(s) 254, 434
StyD4I CCNGG 1 cut(s) 310
TaiI ACGT 2 cut(s) 158, 397
TasI AATT 1 cut(s) 209
TauI GCSGC 3 cut(s) 42, 60, 358
TfiI GAWTC 4 cut(s) 173, 250, 423, 455
Tru1I TTAA 2 cut(s) 213, 407
Tru9I TTAA 2 cut(s) 213, 407
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 99, 569
XapI RAATTY 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 253
XspI CTAG 2 cut(s) 254, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.