Rh1AG325200

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003350
Physical Location & Seq
Reverse (-)
55879726 .. 55882547
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG325200.1

Sequence Viewer

Length: 465 bp
ATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAAATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

154

Amino Acids

16.69

Weight (kDa)

10.28

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 92 - 154 1.6e-14 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 5 cut(s) 39, 42, 57, 193, 346
AcsI RAATTY 2 cut(s) 163, 200
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 3 cut(s) 168, 364, 446
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 3 cut(s) 68, 178, 257
AluI AGCT 3 cut(s) 68, 178, 257
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 90, 140
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 163, 200
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 90, 140
BfaI CTAG 2 cut(s) 245, 425
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 4 cut(s) 40, 58, 117, 347
BlsI GCNGC 4 cut(s) 41, 59, 118, 348
Bme1390I CCNGG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 172, 204
BpmI CTGGAG 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 3 cut(s) 135, 165, 334
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 90, 140
BsmI GAATGC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 137, 161
BspACI CCGC 5 cut(s) 39, 42, 57, 193, 346
BspCNI CTCAG 3 cut(s) 136, 166, 333
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 144, 174, 320
BstFNI CGCG 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 90, 140
BstMWI GCNNNNNNNGC 2 cut(s) 122, 235
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 103
BtrI CACGTC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 111
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 144, 174, 320
DraI TTTAAA 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 1 cut(s) 114
FaiI YATR 5 cut(s) 65, 112, 233, 296, 309
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 4 cut(s) 40, 58, 117, 347
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 40, 58, 117, 347
FspBI CTAG 2 cut(s) 245, 425
GluI GCNGC 4 cut(s) 40, 58, 117, 347
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 453
Hin1II CATG 1 cut(s) 114
HinfI GANTC 4 cut(s) 241, 414, 435, 446
Hpy188I TCNGA 3 cut(s) 23, 323, 413
Hpy188III TCNNGA 3 cut(s) 245, 361, 418
HpyCH4IV ACGT 2 cut(s) 155, 385
HpyCH4V TGCA 4 cut(s) 119, 185, 238, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 235
HpyF3I CTNAG 3 cut(s) 144, 174, 320
HpySE526I ACGT 2 cut(s) 155, 385
Hsp92II CATG 1 cut(s) 114
LmnI GCTCC 2 cut(s) 23, 65
LpnPI CCDG 7 cut(s) 33, 288, 303, 315, 378, 403, 417
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 172, 204
MaeI CTAG 2 cut(s) 245, 425
MaeII ACGT 2 cut(s) 155, 385
MhlI GDGCHC 2 cut(s) 137, 161
MluCI AATT 2 cut(s) 163, 200
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 4 cut(s) 198, 201, 264, 414
MseI TTAA 2 cut(s) 204, 398
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 303
MssI GTTTAAAC 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 122, 235
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 61
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 241, 414, 446
PkrI GCNGC 4 cut(s) 41, 59, 118, 348
PleI GAGTC 1 cut(s) 443
PmeI GTTTAAAC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 204, 398
SatI GCNGC 4 cut(s) 40, 58, 117, 347
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 137, 161
SetI ASST 7 cut(s) 70, 158, 180, 190, 259, 292, 388
SfaNI GCATC 2 cut(s) 172, 204
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 2 cut(s) 163, 200
SsiI CCGC 5 cut(s) 39, 42, 57, 193, 346
SspMI CTAG 2 cut(s) 245, 425
StyD4I CCNGG 1 cut(s) 301
TaiI ACGT 2 cut(s) 158, 388
TasI AATT 2 cut(s) 163, 200
TauI GCSGC 3 cut(s) 42, 60, 349
TfiI GAWTC 3 cut(s) 241, 414, 446
Tru1I TTAA 2 cut(s) 204, 398
Tru9I TTAA 2 cut(s) 204, 398
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 99
XapI RAATTY 2 cut(s) 163, 200
XbaI TCTAGA 1 cut(s) 244
XspI CTAG 2 cut(s) 245, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.