Rroxscaffold_3G00263010

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003350
Physical Location & Seq
Reverse (-)
56956212 .. 56959441
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263010.1

Sequence Viewer

Length: 735 bp
ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCATAGCTCAAAGATGGCTCATTTCAGTCCAATCGGAGCAAACCCATGTCGCGGCGGTGCTGGGTTTATCGGCTCCATAGCTTCCGATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCTAAAACGGGCTCTCAAACTGAGAGATTGACATGCTCGAGTAGTGCCATGCTACTCAGGAGTCCTCAACTAGGCTTGTTTCGATGGGCAGCAGTTTCACCACCTTTCCCCAACAGGTGCATGACAACAGTGGGTAATACGGTTGAATCAGCAACCCAAAATTCAATGACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGGCATATAAGGAAGCTGTACAGGAAGTGAGGGGGCATAGAGAAATACCTGATATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCACTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCACTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

244

Amino Acids

27.15

Weight (kDa)

10.56

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 143 - 239 8.1e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 17, 25, 90, 93, 364, 514, 679
AcsI RAATTY 2 cut(s) 334, 371
AfaI GTAC 2 cut(s) 429, 501
AfiI CCNNNNNNNGG 2 cut(s) 89, 245
AgsI TTSAA 4 cut(s) 320, 339, 532, 614
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 5 cut(s) 45, 119, 349, 425, 691
AluI AGCT 5 cut(s) 45, 119, 349, 425, 691
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 167, 263
ApoI RAATTY 2 cut(s) 334, 371
AspS9I GGNCC 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 211
BanII GRGCYC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 154, 275
BccI CCATC 3 cut(s) 46, 119, 252
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 245, 593
BisI GCNGC 4 cut(s) 91, 168, 264, 515
BlsI GCNGC 4 cut(s) 92, 169, 265, 516
Bme1390I CCNGG 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 245
Bse1I ACTGG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 89, 245
BseMII CTCAG 5 cut(s) 186, 244, 336, 502, 715
BseNI ACTGG 1 cut(s) 666
BseXI GCAGC 2 cut(s) 154, 275
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 686
BsiHKCI CYCGRG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 33, 719
BslI CCNNNNNNNGG 2 cut(s) 89, 245
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 33, 719
BsmI GAATGC 2 cut(s) 170, 721
BsnI GGCC 1 cut(s) 686
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 427
BspACI CCGC 7 cut(s) 17, 25, 90, 93, 364, 514, 679
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 5 cut(s) 187, 243, 337, 501, 714
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 666
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 304, 316, 630
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 5 cut(s) 195, 230, 345, 488, 701
BstENI CCTNNNNNAGG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 173, 406
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 469
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 154, 275
BsuRI GGCC 1 cut(s) 686
BtsIMutI CAGTG 2 cut(s) 309, 626
Cac8I GCNNGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 684
Csp6I GTAC 2 cut(s) 428, 500
CviAII CATG 5 cut(s) 84, 162, 207, 223, 295
CviQI GTAC 2 cut(s) 428, 500
DdeI CTNAG 5 cut(s) 195, 230, 345, 488, 701
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 5 cut(s) 87, 165, 210, 226, 298
FaqI GGGAC 2 cut(s) 33, 719
FatI CATG 5 cut(s) 83, 161, 206, 222, 294
FauI CCCGC 2 cut(s) 10, 371
Fnu4HI GCNGC 4 cut(s) 91, 168, 264, 515
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 4 cut(s) 91, 168, 264, 515
FspBI CTAG 2 cut(s) 245, 593
GluI GCNGC 4 cut(s) 91, 168, 264, 515
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 1 cut(s) 686
Hin1II CATG 5 cut(s) 87, 165, 210, 226, 298
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 5 cut(s) 235, 320, 582, 603, 614
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 4 cut(s) 74, 124, 491, 581
Hpy188III TCNNGA 4 cut(s) 232, 529, 586, 724
HpyCH4III ACNGT 3 cut(s) 304, 316, 630
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 7 cut(s) 4, 170, 294, 356, 409, 484, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 406
HpyF3I CTNAG 5 cut(s) 195, 230, 345, 488, 701
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 5 cut(s) 87, 165, 210, 226, 298
LmnI GCTCC 2 cut(s) 74, 116
Lsp1109I GCAGC 2 cut(s) 154, 275
LweI GCATC 2 cut(s) 343, 375
MaeI CTAG 2 cut(s) 245, 593
MaeII ACGT 1 cut(s) 553
MboII GAAGA 1 cut(s) 682
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 2 cut(s) 334, 371
MlyI GAGTC 2 cut(s) 244, 612
MnlI CCTC 6 cut(s) 249, 369, 372, 432, 582, 675
MseI TTAA 2 cut(s) 11, 375
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 2 cut(s) 170, 721
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 173, 406
NlaIII CATG 5 cut(s) 87, 165, 210, 226, 298
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 211
PctI GAATGC 2 cut(s) 170, 721
PfeI GAWTC 3 cut(s) 320, 582, 614
PkrI GCNGC 4 cut(s) 92, 169, 265, 516
PleI GAGTC 2 cut(s) 243, 611
PpsI GAGTC 2 cut(s) 243, 611
Psp6I CCWGG 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 684
PspXI VCTCGAGB 1 cut(s) 211
RsaI GTAC 2 cut(s) 429, 501
RsaNI GTAC 2 cut(s) 428, 500
SaqAI TTAA 2 cut(s) 11, 375
SatI GCNGC 4 cut(s) 91, 168, 264, 515
Sau96I GGNCC 1 cut(s) 684
SchI GAGTC 2 cut(s) 244, 612
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 2 cut(s) 343, 375
Sfr274I CTCGAG 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 211
SmlI CTYRAG 2 cut(s) 211, 722
SmoI CTYRAG 2 cut(s) 211, 722
Sse9I AATT 2 cut(s) 334, 371
SsiI CCGC 7 cut(s) 17, 25, 90, 93, 364, 514, 679
SspMI CTAG 2 cut(s) 245, 593
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 304, 316, 630
TaiI ACGT 1 cut(s) 556
TaqI TCGA 2 cut(s) 212, 256
TasI AATT 2 cut(s) 334, 371
TatI WGTACW 1 cut(s) 427
TauI GCSGC 2 cut(s) 93, 517
TfiI GAWTC 3 cut(s) 320, 582, 614
Tru1I TTAA 2 cut(s) 11, 375
Tru9I TTAA 2 cut(s) 11, 375
TscAI CASTG 2 cut(s) 309, 633
TseI GCWGC 2 cut(s) 167, 263
TspDTI ATGAA 2 cut(s) 150, 728
TspRI CASTG 2 cut(s) 309, 633
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 334, 371
XceI RCATGY 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 211
XspI CTAG 2 cut(s) 245, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.