Rh1AG145800

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003350
Physical Location & Seq
Reverse (-)
27547292 .. 27551024
3733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG145800.1

Sequence Viewer

Length: 774 bp
ATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAAGTAGTGCCTTGCTAATTAGGAGTCCTCAACCAGGCTTGCTTCAATGGGCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTGGGTAATACGGTTGAATCAGCAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAATGCGATAGGGAGCTGGATGAGAAGGTTGCAGAGGAAGCAAAATTGTTTGTACTTGTTTATCATGGAGGCATCAGAACAAAGAATCCTGAAGAACTTGCAGGCTATGATGTGGATCTCACTACATATGCTATTGTAACTCATGAAGTCCCAAAACAACCTTTAGTTGATGAGGATGAGGCGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

257

Amino Acids

28.08

Weight (kDa)

8.59

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 119 - 198 5.3e-18 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 39, 42, 57, 313, 424, 764
AclWI GGATC 1 cut(s) 705
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 2 cut(s) 411, 636
AfiI CCNNNNNNNGG 2 cut(s) 38, 194
AgsI TTSAA 5 cut(s) 206, 269, 288, 442, 524
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 2 cut(s) 193, 379
AloI GAACNNNNNNTCC 2 cut(s) 652, 684
AluBI AGCT 4 cut(s) 68, 298, 377, 598
AluI AGCT 4 cut(s) 68, 298, 377, 598
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 90, 140
AlwI GGATC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 116, 212
ApoI RAATTY 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 213
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 103, 224
BciT130I CCWGG 2 cut(s) 195, 381
BcoDI GTCTC 2 cut(s) 90, 140
BfaI CTAG 2 cut(s) 365, 503
BisI GCNGC 5 cut(s) 40, 58, 117, 213, 425
BlsI GCNGC 5 cut(s) 41, 59, 118, 214, 426
Bme1390I CCNGG 2 cut(s) 195, 381
BmgBI CACGTC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 195, 381
BmsI GCATC 4 cut(s) 230, 292, 324, 663
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 145, 264
BsaBI GATNNNNATC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 194
Bse1I ACTGG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 2 cut(s) 195, 381
BseGI GGATG 3 cut(s) 607, 763, 772
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 2 cut(s) 38, 194
BseMII CTCAG 3 cut(s) 135, 285, 412
BseNI ACTGG 1 cut(s) 576
BseXI GCAGC 2 cut(s) 103, 224
BseYI CCCAGC 2 cut(s) 47, 233
Bsh1236I CGCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 161
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 2 cut(s) 38, 194
BsmAI GTCTC 2 cut(s) 90, 140
BsmFI GGGAC 1 cut(s) 716
BsmI GAATGC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 137, 161
Bsp143I GATC 1 cut(s) 697
BspACI CCGC 6 cut(s) 39, 42, 57, 313, 424, 764
BspCNI CTCAG 3 cut(s) 136, 286, 411
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 705
BspTNI GGTCTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 576
BssMI GATC 1 cut(s) 697
Bst2UI CCWGG 2 cut(s) 195, 381
Bst4CI ACNGT 2 cut(s) 253, 265
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 200, 685
BstDEI CTNAG 3 cut(s) 144, 294, 398
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 607, 763, 772
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 700
BstMAI GTCTC 2 cut(s) 90, 140
BstMBI GATC 1 cut(s) 697
BstMWI GCNNNNNNNGC 3 cut(s) 122, 355, 620
BstNI CCWGG 2 cut(s) 195, 381
BstSCI CCNGG 2 cut(s) 193, 379
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 103, 224
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 3 cut(s) 607, 763, 772
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 200, 685
CciI TCATGA 1 cut(s) 724
Csp6I GTAC 2 cut(s) 410, 635
CviAII CATG 3 cut(s) 111, 647, 725
CviQI GTAC 2 cut(s) 410, 635
DdeI CTNAG 3 cut(s) 144, 294, 398
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
DraI TTTAAA 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 693
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 193, 379
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 3 cut(s) 114, 650, 728
FaqI GGGAC 1 cut(s) 716
FatI CATG 3 cut(s) 110, 646, 724
FauI CCCGC 1 cut(s) 320
FauNDI CATATG 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 40, 58, 117, 213, 425
FokI GGATG 2 cut(s) 614, 770
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 40, 58, 117, 213, 425
FspBI CTAG 2 cut(s) 365, 503
GluI GCNGC 5 cut(s) 40, 58, 117, 213, 425
GsaI CCCAGC 2 cut(s) 51, 237
GsuI CTGGAG 1 cut(s) 531
Hin1II CATG 3 cut(s) 114, 650, 728
HinfI GANTC 8 cut(s) 184, 269, 284, 361, 492, 513, 524, 667
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 4 cut(s) 23, 401, 491, 659
Hpy188III TCNNGA 6 cut(s) 281, 365, 439, 496, 671, 725
HpyAV CCTTC 1 cut(s) 601
HpyCH4III ACNGT 2 cut(s) 253, 265
HpyCH4IV ACGT 2 cut(s) 155, 463
HpyCH4V TGCA 7 cut(s) 119, 243, 305, 358, 394, 614, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 355, 620
HpyF3I CTNAG 3 cut(s) 144, 294, 398
HpySE526I ACGT 2 cut(s) 155, 463
Hsp92II CATG 3 cut(s) 114, 650, 728
Kzo9I GATC 1 cut(s) 697
LmnI GCTCC 4 cut(s) 23, 65, 382, 595
Lsp1109I GCAGC 2 cut(s) 103, 224
LweI GCATC 4 cut(s) 230, 292, 324, 663
MaeI CTAG 2 cut(s) 365, 503
MaeII ACGT 2 cut(s) 155, 463
MaeIII GTNAC 1 cut(s) 718
MalI GATC 1 cut(s) 699
MboI GATC 1 cut(s) 697
MboII GAAGA 2 cut(s) 592, 686
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 2 cut(s) 137, 161
MluCI AATT 3 cut(s) 177, 320, 626
MlyI GAGTC 2 cut(s) 193, 522
MnlI CCTC 8 cut(s) 198, 318, 321, 492, 610, 644, 748, 754
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 2 cut(s) 324, 476
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 195, 381
MssI GTTTAAAC 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 2 cut(s) 195, 381
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 122, 355, 620
NdeI CATATG 1 cut(s) 709
NdeII GATC 1 cut(s) 697
NlaIII CATG 3 cut(s) 114, 650, 728
NlaIV GGNNCC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 245
PagI TCATGA 1 cut(s) 724
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 6 cut(s) 269, 284, 361, 492, 524, 667
PkrI GCNGC 5 cut(s) 41, 59, 118, 214, 426
PleI GAGTC 2 cut(s) 192, 521
PmeI GTTTAAAC 1 cut(s) 477
PpsI GAGTC 2 cut(s) 192, 521
Psp6I CCWGG 2 cut(s) 193, 379
PspFI CCCAGC 2 cut(s) 47, 233
PspGI CCWGG 2 cut(s) 193, 379
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 2 cut(s) 411, 636
RsaNI GTAC 2 cut(s) 410, 635
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 324, 476
SatI GCNGC 5 cut(s) 40, 58, 117, 213, 425
Sau3AI GATC 1 cut(s) 697
SchI GAGTC 2 cut(s) 193, 522
ScrFI CCNGG 2 cut(s) 195, 381
SduI GDGCHC 2 cut(s) 137, 161
SfaNI GCATC 4 cut(s) 230, 292, 324, 663
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 160, 279
SmoI CTYRAG 2 cut(s) 160, 279
Sse9I AATT 3 cut(s) 177, 320, 626
SsiI CCGC 6 cut(s) 39, 42, 57, 313, 424, 764
SspMI CTAG 2 cut(s) 365, 503
StyD4I CCNGG 2 cut(s) 193, 379
TaaI ACNGT 2 cut(s) 253, 265
TaiI ACGT 2 cut(s) 158, 466
TasI AATT 3 cut(s) 177, 320, 626
TatI WGTACW 1 cut(s) 634
TauI GCSGC 3 cut(s) 42, 60, 427
TfiI GAWTC 6 cut(s) 269, 284, 361, 492, 524, 667
Tru1I TTAA 2 cut(s) 324, 476
Tru9I TTAA 2 cut(s) 324, 476
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 116, 212
TspDTI ATGAA 2 cut(s) 99, 741
TspRI CASTG 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 2 cut(s) 365, 503
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.