Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003350

Physical Location & Seq

Genomic Coordinates Forward (+)

17016826 .. 17019060

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCAATCTTTAAGTGCGAGCATCCGATTGGTCCGGAGGCAAAGAGTCGACGGCTCAAAAATTGCTCATTTCAGATCAATTGGAGCTTACCAATTGAGCGGCGGTTCTGGGTATAGCTCGTTGGCGTCGGATCGTTTGGCCTCTGCCAAGAAATTGGGGGATTTATCGGGTTTTGGGCCTTCGAAAAGTTCCTTGTTTCAGTCAGTTTCCAAGTTTTCGTATCGATCTTCGGCCCCGTTCACAACAATGAGCTCTCAAACTGCGGCCCCAACTTCTTCCTGTAATTCCAACTTATTCAAGAGTGCTCAACTAAGCTTTTTTCGATGTGCGGCAGTTTCACCTCCTTTCCCGAGAAGGTGCATTGCAACAGGGGGAAATTCTGTTCAGTCGGCTACTCAAGATTCAGGAATGTCCGTCTCTGATGTAGCTCCTCGCATCAAATTCAAGAGGCTTGATAAAACTGCCCACCACATAATGCAGATTCTAGATAAGGAAGCTTTAGAGGAAGTGAAGGTGCAGAGAGAAATACCAGATGTTAGGCCTGGTTATATGGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGACGTGTTTCAGTCGTGAAAGGTGTTGTGATTGCTAGACGTAATGCTGGTCTAAACACTACAATTAGAATCAGGAGGCAAGTGGCTGGAGTCGGGGTTGAATCTCTCTTCCCATTGTATTCGCCGAACATAAAGGAAATTAAGGTGCTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTGTACTATGTCAGGGACAAAATCAATGCATTCAAGAAGCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

270

Amino Acids

29.66

Weight (kDa)

10.67

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24240 AT1G24240 AT4G11630 AT5G11750 AT5G11750
fragaria_vesca	FvH4_5g06380 FvH4_5g06380 FvH4_5g06380
malus_domestica	MD06G1165200.v1.1 MD14G1170700.v1.1
prunus_persica	Prupe.5G164800_v2.0.a1
pyrus_communis	pycom06g14770 pycom14g14250
rosa_chinensis	RchiOBHm_Chr1g0313261 RchiOBHm_Chr7g0192431 RchiOBHm_Chr7g0192461
rosa_laevigata	RLG00000004368
rosa_multiflora	Rmu_sc0003108.1_g000025
rosa_roxburghii	Rroxscaffold_3G00263010
rosa_rugosa	Rorug01G0316400 Rorug01G0316500 Rorug01G0316600 Rorug01G0316700 Rorug07G0001600
rosa_samantha	Rh1AG145800 Rh1AG325200 Rh1CG137200 Rh1DG152300 Rh7AG125400 Rh7BG127700 Rh7CG129400 Rh7DG129500
rosa_wichuraiana	Rw1G000120 Rw1G028840 Rw7G010140 Rw7G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	5 cut(s)	99, 102, 263, 329, 751
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	376, 440
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	573, 767
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	298, 445, 686, 796
AjiI	CACGTC	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	541
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	7 cut(s)	86, 117, 252, 315, 428, 497, 763
AluI	AGCT	7 cut(s)	86, 117, 252, 315, 428, 497, 763
Alw21I	GWGCWC	2 cut(s)	254, 307
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	6 cut(s)	138, 176, 231, 264, 539, 756
ApoI	RAATTY	2 cut(s)	376, 440
AspS9I	GGNCC	5 cut(s)	31, 176, 232, 265, 756
AsuHPI	GGTGA	1 cut(s)	330
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	254, 307
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	485, 621
BisI	GCNGC	3 cut(s)	100, 264, 330
BlsI	GCNGC	3 cut(s)	101, 265, 331
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	590
BmgT120I	GGNCC	5 cut(s)	31, 176, 232, 265, 756
BmiI	GGNNCC	2 cut(s)	234, 267
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	30, 444
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	223
BseGI	GGATG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	420
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	6 cut(s)	140, 178, 233, 266, 541, 758
BshVI	ATCGAT	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	254, 307
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	791
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	6 cut(s)	140, 178, 233, 266, 541, 758
BsoBI	CYCGRG	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	254, 307
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	74, 130, 224
BspACI	CCGC	5 cut(s)	99, 102, 263, 329, 751
BspANI	GGCC	6 cut(s)	140, 178, 233, 266, 541, 758
BspCNI	CTCAG	1 cut(s)	573
BspDI	ATCGAT	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	234, 267
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	360
BssMI	GATC	3 cut(s)	74, 130, 224
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	698
BstACI	GRCGYC	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	311, 560
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	77, 133, 227
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	74, 130, 224
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	140, 178, 233, 266, 541, 758
BsuTUI	ATCGAT	1 cut(s)	223
BtrI	CACGTC	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	5 cut(s)	31, 176, 232, 265, 756
ClaI	ATCGAT	1 cut(s)	223
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	572, 766
CviQI	GTAC	2 cut(s)	572, 766
DdeI	CTNAG	2 cut(s)	311, 560
DpnI	GATC	3 cut(s)	76, 132, 226
DpnII	GATC	3 cut(s)	74, 130, 224
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	793
EcoT38I	GRGCYC	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	421
FaiI	YATR	6 cut(s)	114, 473, 549, 551, 716, 771
FaqI	GGGAC	1 cut(s)	791
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	100, 264, 330
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	100, 264, 330
FspBI	CTAG	2 cut(s)	485, 621
GluI	GCNGC	3 cut(s)	100, 264, 330
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	6 cut(s)	140, 178, 233, 266, 541, 758
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	2 cut(s)	313, 495
HinfI	GANTC	6 cut(s)	45, 401, 481, 654, 675, 686
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	49, 240
Hpy188I	TCNGA	5 cut(s)	26, 74, 130, 421, 563
Hpy8I	GTNNAC	2 cut(s)	49, 240
Hpy99I	CGWCG	3 cut(s)	53, 130, 591
HpyAV	CCTTC	3 cut(s)	189, 348, 505
HpyCH4IV	ACGT	2 cut(s)	589, 625
HpyCH4V	TGCA	7 cut(s)	4, 360, 365, 478, 517, 556, 791
HpyF3I	CTNAG	2 cut(s)	311, 560
HpySE526I	ACGT	2 cut(s)	589, 625
Hsp92I	GRCGYC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	74, 130, 224
LmnI	GCTCC	2 cut(s)	83, 433
LweI	GCATC	2 cut(s)	30, 444
MaeI	CTAG	2 cut(s)	485, 621
MaeII	ACGT	2 cut(s)	589, 625
MalI	GATC	3 cut(s)	76, 132, 226
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	3 cut(s)	74, 130, 224
MboII	GAAGA	4 cut(s)	219, 267, 685, 754
MfeI	CAATTG	2 cut(s)	78, 92
MhlI	GDGCHC	2 cut(s)	254, 307
MluCI	AATT	9 cut(s)	60, 78, 92, 152, 283, 376, 440, 648, 723
MlyI	GAGTC	2 cut(s)	54, 684
MmeI	TCCRAC	2 cut(s)	108, 312
MnlI	CCTC	8 cut(s)	30, 151, 351, 441, 441, 496, 654, 747
Mph1103I	ATGCAT	1 cut(s)	793
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	2 cut(s)	11, 726
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	2 cut(s)	78, 92
Mva1269I	GAATGC	1 cut(s)	791
MvaI	CCWGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	74, 130, 224
NlaIV	GGNNCC	2 cut(s)	234, 267
NsiI	ATGCAT	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	541
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	4 cut(s)	401, 481, 654, 686
PkrI	GCNGC	3 cut(s)	101, 265, 331
PleI	GAGTC	2 cut(s)	53, 683
PpsI	GAGTC	2 cut(s)	53, 683
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	234, 267
PspPI	GGNCC	5 cut(s)	31, 176, 232, 265, 756
RsaI	GTAC	2 cut(s)	573, 767
RsaNI	GTAC	2 cut(s)	572, 766
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	254
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	11, 726
SatI	GCNGC	3 cut(s)	100, 264, 330
Sau3AI	GATC	3 cut(s)	74, 130, 224
Sau96I	GGNCC	5 cut(s)	31, 176, 232, 265, 756
SchI	GAGTC	2 cut(s)	54, 684
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	254, 307
SfaNI	GCATC	2 cut(s)	30, 444
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	9 cut(s)	60, 78, 92, 152, 283, 376, 440, 648, 723
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	5 cut(s)	99, 102, 263, 329, 751
SspMI	CTAG	2 cut(s)	485, 621
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	541
TaiI	ACGT	2 cut(s)	592, 628
TaqI	TCGA	4 cut(s)	48, 182, 223, 322
TasI	AATT	9 cut(s)	60, 78, 92, 152, 283, 376, 440, 648, 723
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	3 cut(s)	102, 266, 332
TfiI	GAWTC	4 cut(s)	401, 481, 654, 686
Tru1I	TTAA	2 cut(s)	11, 726
Tru9I	TTAA	2 cut(s)	11, 726
TspGWI	ACGGA	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	376, 440
XbaI	TCTAGA	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	485, 621
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.