RchiOBHm_Chr1g0313261

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003350
Physical Location & Seq
Forward (+)
387348 .. 389355
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54408

Sequence Viewer

Length: 360 bp
ATGATCTCTTCCTATTGTCAGCAATTGTTAATTCTATGCTTTCCTCAGATTCTAGATAAGGAAGCTGTAGAGGAAGTGAGGAGGCAGAGAGAAAAACCTGATATAAAACCTTGTTATTTCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAATTGTTGGAGTAGTCGGGGTTGAATCTCTCTTTCCACTGGAGATAAAAGTATTGGACAAGAAGAAAGTGAGGAGGGCGAAGCTTTACTATCTCATTGACAAAATGAATGCTCTAAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

119

Amino Acids

13.94

Weight (kDa)

10.16

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 22 - 113 4.3e-18 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 2 cut(s) 172, 257
AluBI AGCT 2 cut(s) 65, 316
AluI AGCT 2 cut(s) 65, 316
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 59, 142
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 94, 319
BsmI GAATGC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 58, 141
BsrI ACTGG 1 cut(s) 276
BssMI GATC 1 cut(s) 3
Bst6I CTCTTC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 45, 128
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstSFI CTRYAG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 269
Csp6I GTAC 1 cut(s) 140
CviJI RGCY 3 cut(s) 65, 232, 316
CviKI_1 RGCY 3 cut(s) 65, 232, 316
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 45, 128
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
FaiI YATR 2 cut(s) 37, 104
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 49, 222, 257
Hpy188I TCNGA 3 cut(s) 48, 131, 221
Hpy188III TCNNGA 3 cut(s) 53, 169, 226
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 45, 128
HpySE526I ACGT 1 cut(s) 193
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 111, 186, 211, 257
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 193
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 307
MfeI CAATTG 1 cut(s) 23
MluCI AATT 3 cut(s) 23, 30, 234
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 54, 64, 72, 75, 222, 297, 300
MseI TTAA 1 cut(s) 29
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 346
NdeII GATC 1 cut(s) 3
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 49, 222, 257
PkrI GCNGC 1 cut(s) 156
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 3
SetI ASST 5 cut(s) 67, 100, 112, 196, 318
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 23, 30, 234
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 53
TaiI ACGT 1 cut(s) 196
TasI AATT 3 cut(s) 23, 30, 234
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 49, 222, 257
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 276
XbaI TCTAGA 1 cut(s) 52
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.