AT4G11630

ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003350
Physical Location & Seq
Forward (+)
7019664 .. 7021348
1685 bp
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UTR
Exon/CDS
Intron
AT4G11630.1

Sequence Viewer

Length: 678 bp
ATGCAATCGATTCGTGGCAGTACACGGTTGCTTCAGAGGCATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTTCTTGTGGAAGCTGGTCTGAAAATGAATCCAGAAAACTAGGGTTTGATTCTTGCCCTTCTAGCAGAGCTGCGACATATCTCATTAGCTCGTTGAAAAATGCAGGCTTTTCCTCTTCAGCTATACCTAAACAAAACTTTACGTATGCGTCGAGGTGTTTTTCCACCACTGGAGATTCTTCTGTTCAAGGATCTCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTAAGCATATAATGCAGATTGTAGACAAGGAAGCGGTTGAGGAAGTGAGATCTCTTAGAGAGATTCCTGAGATAAAGCCCGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAAGAGACGTGTATCAATCGTGAAAGGCGTCGTCATAGCAAGGCGTAATGCTGGTCTGAACTCAACATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGCGTTGAATCCATGTTCCCCTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGAGCCAAGCTATATTACCTCAGGGACAAGGTGAATGCTCTTAAGAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

225

Amino Acids

25.41

Weight (kDa)

10.4

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 124 - 219 2.9e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AciI CCGC 3 cut(s) 319, 333, 368
AclWI GGATC 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 17, 183
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 1 cut(s) 22
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 3 cut(s) 178, 269, 557
AjiI CACGTC 1 cut(s) 461
AluBI AGCT 6 cut(s) 96, 152, 171, 203, 430, 634
AluI AGCT 6 cut(s) 96, 152, 171, 203, 430, 634
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 152, 427
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 667
AxyI CCTNAGG 2 cut(s) 587, 644
BbvI GCAGC 2 cut(s) 139, 439
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 2 cut(s) 122, 144
BfrI CTTAAG 1 cut(s) 665
BglII AGATCT 1 cut(s) 383
BisI GCNGC 3 cut(s) 153, 320, 428
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 3 cut(s) 154, 321, 429
Bme1390I CCNGG 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 2 cut(s) 273, 564
Bpu1102I GCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 480
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bse1I ACTGG 1 cut(s) 256
Bse21I CCTNAGG 2 cut(s) 587, 644
BseCI ATCGAT 1 cut(s) 8
BseMII CTCAG 6 cut(s) 270, 314, 393, 438, 578, 658
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 139, 439
BsgI GTGCAG 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 1 cut(s) 664
Bsp143I GATC 2 cut(s) 272, 383
Bsp1720I GCTNAGC 1 cut(s) 336
BspACI CCGC 3 cut(s) 319, 333, 368
BspCNI CTCAG 6 cut(s) 271, 313, 394, 439, 579, 657
BspDI ATCGAT 1 cut(s) 8
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 619
BspTI CTTAAG 1 cut(s) 665
BsrI ACTGG 1 cut(s) 256
BssMI GATC 2 cut(s) 272, 383
BssNI GRCGYC 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 3 cut(s) 69, 202, 619
BstACI GRCGYC 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 8 cut(s) 279, 300, 336, 389, 402, 447, 587, 644
BstKTI GATC 2 cut(s) 275, 386
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 2 cut(s) 272, 383
BstMWI GCNNNNNNNGC 3 cut(s) 37, 144, 346
BstSCI CCNGG 1 cut(s) 412
BstSNI TACGTA 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 139, 439
BstX2I RGATCY 2 cut(s) 272, 383
BstYI RGATCY 2 cut(s) 272, 383
Bsu15I ATCGAT 1 cut(s) 8
Bsu36I CCTNAGG 2 cut(s) 587, 644
BsuTUI ATCGAT 1 cut(s) 8
BtrI CACGTC 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 8
CseI GACGC 2 cut(s) 219, 469
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 562
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 8 cut(s) 279, 300, 336, 389, 402, 447, 587, 644
DpnI GATC 2 cut(s) 274, 385
DpnII GATC 2 cut(s) 272, 383
Eam1104I CTCTTC 3 cut(s) 69, 202, 619
EarI CTCTTC 3 cut(s) 69, 202, 619
Eco105I TACGTA 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 17, 183
Eco81I CCTNAGG 2 cut(s) 587, 644
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 1 cut(s) 565
FaiI YATR 8 cut(s) 160, 206, 228, 342, 344, 488, 563, 637
FaqI GGGAC 1 cut(s) 662
FatI CATG 1 cut(s) 561
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 153, 320, 428
Fsp4HI GCNGC 3 cut(s) 153, 320, 428
FspBI CTAG 2 cut(s) 122, 144
GluI GCNGC 3 cut(s) 153, 320, 428
GsuI CTGGAG 2 cut(s) 273, 564
HapII CCGG 1 cut(s) 414
HgaI GACGC 2 cut(s) 219, 469
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 1 cut(s) 565
HinfI GANTC 8 cut(s) 10, 110, 131, 257, 281, 306, 397, 557
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 3 cut(s) 23, 358, 607
Hpy188I TCNGA 5 cut(s) 36, 103, 286, 303, 510
Hpy188III TCNNGA 4 cut(s) 114, 278, 401, 472
Hpy8I GTNNAC 3 cut(s) 23, 358, 607
Hpy99I CGWCG 2 cut(s) 235, 485
HpyAV CCTTC 2 cut(s) 150, 525
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 2 cut(s) 224, 460
HpyCH4V TGCA 4 cut(s) 4, 185, 349, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 144, 346
HpyF3I CTNAG 8 cut(s) 279, 300, 336, 389, 402, 447, 587, 644
HpySE526I ACGT 2 cut(s) 224, 460
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 1 cut(s) 565
Kzo9I GATC 2 cut(s) 272, 383
LguI GCTCTTC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 139, 439
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 122, 144
MaeII ACGT 2 cut(s) 224, 460
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 274, 385
MboI GATC 2 cut(s) 272, 383
MboII GAAGA 8 cut(s) 56, 69, 72, 75, 189, 252, 625, 636
MflI RGATCY 2 cut(s) 272, 383
MluCI AATT 1 cut(s) 525
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 7 cut(s) 30, 205, 228, 309, 367, 582, 653
MseI TTAA 4 cut(s) 315, 597, 666, 676
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 664
MwoI GCNNNNNNNGC 3 cut(s) 37, 144, 346
NciI CCSGG 1 cut(s) 414
NdeII GATC 2 cut(s) 272, 383
NlaIII CATG 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 477
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 7 cut(s) 10, 110, 131, 257, 306, 397, 557
PkrI GCNGC 3 cut(s) 154, 321, 429
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 225
PsuI RGATCY 2 cut(s) 272, 383
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 4 cut(s) 315, 597, 666, 676
SatI GCNGC 3 cut(s) 153, 320, 428
Sau3AI GATC 2 cut(s) 272, 383
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 414
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
SnaBI TACGTA 1 cut(s) 225
Sse9I AATT 1 cut(s) 525
SsiI CCGC 3 cut(s) 319, 333, 368
SspMI CTAG 2 cut(s) 122, 144
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 2 cut(s) 227, 463
TaqI TCGA 2 cut(s) 8, 233
TasI AATT 1 cut(s) 525
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 7 cut(s) 10, 110, 131, 257, 306, 397, 557
Tru1I TTAA 4 cut(s) 315, 597, 666, 676
Tru9I TTAA 4 cut(s) 315, 597, 666, 676
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 152, 427
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 2 cut(s) 122, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.