Rh7DG129500

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003350
Physical Location & Seq
Forward (+)
10886633 .. 10896388
9756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG129500.1

Sequence Viewer

Length: 1203 bp
ATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCTAAAACAGGCTCTCAAACTGAGACATTGACATGCTCGAGTAGTGCCATGCTACTTAGGAGTCCTCAACTAGGCTTGTTTCGATGGACAGCAGTTTCACCACCTTTCCCCAGCAGGTGCATGACAACAGTGGGTAATACGGTTGAATCATCAACCCAAAATTCAATGACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTACAGGAAGTGAGGGGGCATAGAGAAATACCTGATATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGCCAAGTTTGCAATCAGAAGGGGGCTGGTCGAACTTGCTGTACCCTAGCAATGAAGTTCATCAGCCTTTGGACCTTGCTCTTGTCTTCGTTGGTACAGAGTTGCAATCTTCAGATATTTCTGCAAGCAAACTCTCCAAACATGCTTATCCAGCTCTTGTGGACTTGCTTAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTGTATTTCTGCATTAGAGAAGCATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTTGGAGTCATGCTCAATGTGGGGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATATTCTTTCGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGAACCCCCACATTCAGAGACTTTGTATTTGGAGGGCGTGATAGCTACTTTTCACTCATCAAAACTTGTTGGTATGGCATTTGGTCCCAGTACATCTGCAAGAACTTATTGGCTAATAAGGGCCTGCTTAACTCTAGCATTTGGTCCCAGTATGGCATTTGATCCCAACAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

400

Amino Acids

43.63

Weight (kDa)

8.79

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 127 - 187 2.2e-10 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 228
Acc36I ACCTGC 2 cut(s) 228, 927
AccII CGCG 1 cut(s) 39
AciI CCGC 5 cut(s) 39, 42, 57, 313, 466
AclWI GGATC 2 cut(s) 1012, 1181
AcsI RAATTY 4 cut(s) 283, 320, 751, 844
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 5 cut(s) 381, 453, 602, 655, 1117
AfiI CCNNNNNNNGG 3 cut(s) 38, 194, 925
AgsI TTSAA 4 cut(s) 269, 288, 484, 905
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 7 cut(s) 68, 298, 377, 713, 910, 1070, 1199
AluI AGCT 7 cut(s) 68, 298, 377, 713, 910, 1070, 1199
Alw26I GTCTC 5 cut(s) 90, 140, 739, 955, 1037
AlwI GGATC 2 cut(s) 1012, 1181
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 2 cut(s) 560, 1146
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 4 cut(s) 283, 320, 751, 844
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
AspS9I GGNCC 6 cut(s) 560, 631, 928, 1109, 1146, 1169
AsuHPI GGTGA 2 cut(s) 213, 905
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 4 cut(s) 631, 928, 1109, 1169
BbsI GAAGAC 1 cut(s) 637
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 201, 946
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 5 cut(s) 90, 140, 739, 955, 1037
BfaI CTAG 6 cut(s) 194, 365, 545, 606, 1025, 1160
BfuAI ACCTGC 2 cut(s) 228, 927
BisI GCNGC 4 cut(s) 40, 58, 117, 467
BlsI GCNGC 4 cut(s) 41, 59, 118, 468
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 4 cut(s) 631, 928, 1109, 1169
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 6 cut(s) 560, 631, 928, 1109, 1146, 1169
BmiI GGNNCC 3 cut(s) 61, 1111, 1171
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 2 cut(s) 1107, 1167
BmsI GCATC 2 cut(s) 292, 324
BmuI ACTGGG 2 cut(s) 1107, 1167
BpiI GAAGAC 1 cut(s) 637
BplI GAGNNNNNCTC 2 cut(s) 866, 898
BpmI CTGGAG 1 cut(s) 573
BsaI GGTCTC 2 cut(s) 90, 955
BsaJI CCNNGG 1 cut(s) 759
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 194, 925
Bse1I ACTGG 2 cut(s) 1113, 1173
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 759
BseGI GGATG 2 cut(s) 828, 957
BseLI CCNNNNNNNGG 3 cut(s) 38, 194, 925
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 135, 285, 454
BseNI ACTGG 2 cut(s) 1113, 1173
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 2 cut(s) 47, 233
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 562, 1148
BsiHKCI CYCGRG 1 cut(s) 160
BslFI GGGAC 2 cut(s) 1095, 1155
BslI CCNNNNNNNGG 3 cut(s) 38, 194, 925
BsmAI GTCTC 5 cut(s) 90, 140, 739, 955, 1037
BsmFI GGGAC 2 cut(s) 1095, 1155
BsmI GAATGC 3 cut(s) 119, 764, 922
BsnI GGCC 2 cut(s) 562, 1148
Bso31I GGTCTC 2 cut(s) 90, 955
BsoBI CYCGRG 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 2 cut(s) 1004, 1186
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 5 cut(s) 39, 42, 57, 313, 466
BspANI GGCC 2 cut(s) 562, 1148
BspCNI CTCAG 3 cut(s) 136, 286, 453
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 61, 1111, 1171
BspMI ACCTGC 2 cut(s) 228, 927
BspPI GGATC 2 cut(s) 1012, 1181
BspTNI GGTCTC 2 cut(s) 90, 955
BsrDI GCAATG 1 cut(s) 616
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 2 cut(s) 1113, 1173
BssECI CCNNGG 1 cut(s) 759
BssMI GATC 2 cut(s) 1004, 1186
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 253, 265
Bst6I CTCTTC 1 cut(s) 953
BstAPI GCANNNNNTGC 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 3 cut(s) 685, 795, 1150
BstDEI CTNAG 4 cut(s) 144, 179, 294, 440
BstDSI CCRYGG 1 cut(s) 759
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 828, 957
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 1007, 1189
BstMAI GTCTC 5 cut(s) 90, 140, 739, 955, 1037
BstMBI GATC 2 cut(s) 1004, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 122, 355, 568, 710
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 3 cut(s) 159, 704, 797
BstSCI CCNGG 1 cut(s) 421
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 1004
BsuRI GGCC 2 cut(s) 562, 1148
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 2 cut(s) 828, 957
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 2 cut(s) 228, 927
Cac8I GCNNGC 3 cut(s) 685, 795, 1150
Cfr13I GGNCC 6 cut(s) 560, 631, 928, 1109, 1146, 1169
Csp6I GTAC 5 cut(s) 380, 452, 601, 654, 1116
CviAII CATG 9 cut(s) 111, 156, 172, 244, 701, 760, 794, 879, 932
CviQI GTAC 5 cut(s) 380, 452, 601, 654, 1116
DdeI CTNAG 4 cut(s) 144, 179, 294, 440
DpnI GATC 2 cut(s) 1006, 1188
DpnII GATC 2 cut(s) 1004, 1186
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 759
Eco31I GGTCTC 2 cut(s) 90, 955
Eco47I GGWCC 4 cut(s) 631, 928, 1109, 1169
Eco57I CTGAAG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 1146
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 9 cut(s) 114, 159, 175, 247, 704, 763, 797, 882, 935
FaqI GGGAC 2 cut(s) 1095, 1155
FatI CATG 9 cut(s) 110, 155, 171, 243, 700, 759, 793, 878, 931
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 40, 58, 117, 467
FokI GGATG 2 cut(s) 835, 964
Fsp4HI GCNGC 4 cut(s) 40, 58, 117, 467
FspBI CTAG 6 cut(s) 194, 365, 545, 606, 1025, 1160
GluI GCNGC 4 cut(s) 40, 58, 117, 467
GsaI CCCAGC 2 cut(s) 51, 237
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 2 cut(s) 562, 1148
Hin1II CATG 9 cut(s) 114, 159, 175, 247, 704, 763, 797, 882, 935
HindIII AAGCTT 2 cut(s) 908, 1197
HinfI GANTC 8 cut(s) 184, 269, 361, 534, 555, 852, 875, 1010
HphI GGTGA 2 cut(s) 213, 905
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 9 cut(s) 23, 443, 533, 577, 673, 829, 916, 1009, 1042
Hpy188III TCNNGA 3 cut(s) 365, 481, 538
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 253, 265
HpyCH4IV ACGT 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 355, 568, 710
HpyF3I CTNAG 4 cut(s) 144, 179, 294, 440
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 9 cut(s) 114, 159, 175, 247, 704, 763, 797, 882, 935
Kzo9I GATC 2 cut(s) 1004, 1186
LmnI GCTCC 2 cut(s) 23, 65
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 292, 324
MaeI CTAG 6 cut(s) 194, 365, 545, 606, 1025, 1160
MaeII ACGT 1 cut(s) 505
MalI GATC 2 cut(s) 1006, 1188
MboI GATC 2 cut(s) 1004, 1186
MboII GAAGA 3 cut(s) 637, 660, 970
MflI RGATCY 1 cut(s) 1004
MluCI AATT 4 cut(s) 283, 320, 751, 844
MlyI GAGTC 3 cut(s) 193, 564, 884
MnlI CCTC 7 cut(s) 198, 318, 321, 384, 534, 942, 1051
MseI TTAA 3 cut(s) 324, 729, 1154
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 3 cut(s) 119, 764, 922
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 122, 355, 568, 710
NcoI CCATGG 1 cut(s) 759
NdeII GATC 2 cut(s) 1004, 1186
NlaIII CATG 9 cut(s) 114, 159, 175, 247, 704, 763, 797, 882, 935
NlaIV GGNNCC 3 cut(s) 61, 1111, 1171
NspI RCATGY 3 cut(s) 159, 704, 797
PaeI GCATGC 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 228
PctI GAATGC 3 cut(s) 119, 764, 922
PfeI GAWTC 5 cut(s) 269, 361, 534, 852, 1010
PkrI GCNGC 4 cut(s) 41, 59, 118, 468
PleI GAGTC 3 cut(s) 192, 563, 883
PpsI GAGTC 3 cut(s) 192, 563, 883
Psp6I CCWGG 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 47, 233
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 61, 1111, 1171
PspPI GGNCC 6 cut(s) 560, 631, 928, 1109, 1146, 1169
PspXI VCTCGAGB 1 cut(s) 160
PsrI GAACNNNNNNTAC 2 cut(s) 584, 616
PsuI RGATCY 1 cut(s) 1004
RsaI GTAC 5 cut(s) 381, 453, 602, 655, 1117
RsaNI GTAC 5 cut(s) 380, 452, 601, 654, 1116
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 324, 729, 1154
SatI GCNGC 4 cut(s) 40, 58, 117, 467
Sau3AI GATC 2 cut(s) 1004, 1186
Sau96I GGNCC 6 cut(s) 560, 631, 928, 1109, 1146, 1169
SchI GAGTC 3 cut(s) 193, 564, 884
ScrFI CCNGG 1 cut(s) 423
SfaNI GCATC 2 cut(s) 292, 324
Sfr274I CTCGAG 1 cut(s) 160
SinI GGWCC 4 cut(s) 631, 928, 1109, 1169
SlaI CTCGAG 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 797
Sse9I AATT 4 cut(s) 283, 320, 751, 844
SsiI CCGC 5 cut(s) 39, 42, 57, 313, 466
SspMI CTAG 6 cut(s) 194, 365, 545, 606, 1025, 1160
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 253, 265
TaiI ACGT 1 cut(s) 508
TaqI TCGA 4 cut(s) 161, 205, 590, 947
TaqII GACCGA 1 cut(s) 916
TasI AATT 4 cut(s) 283, 320, 751, 844
TatI WGTACW 2 cut(s) 379, 1115
TauI GCSGC 3 cut(s) 42, 60, 469
TfiI GAWTC 5 cut(s) 269, 361, 534, 852, 1010
Tru1I TTAA 3 cut(s) 324, 729, 1154
Tru9I TTAA 3 cut(s) 324, 729, 1154
TscAI CASTG 1 cut(s) 258
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 99, 608, 627
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 4 cut(s) 631, 928, 1109, 1169
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 4 cut(s) 283, 320, 751, 844
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 3 cut(s) 159, 704, 797
XhoI CTCGAG 1 cut(s) 160
XspI CTAG 6 cut(s) 194, 365, 545, 606, 1025, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.