Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003350

Physical Location & Seq

Genomic Coordinates Forward (+)

43461107 .. 43463837

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGTTATTCGATCTGGGAAATAGTGAAGCCCTTCATCGATGTTGACCTCAACAACTCCGAGCTCTATTCTGACCGCGCTCAGGCTAACATCAAATCCAACTATCTCTGTTTGCTCTCTTCAACTCTTCGGTCTCTTCCTGAAGCCGTCAAGCAACAAAGCAGATTCTGGGTTCGACTCTTCAAGCTCAGTCAGTCGCTGATTCTTCAAGGCTCAAGCTCGCTGCTTAGAGAAGCTAGCACTTCCGTTTTGGAGATACTGAAAGTTGATGTTATCTCATTTTTGTACATTCCAATACAGATTATGGTGGTGAATATAAAGGCGTTGGAAAAAAAGTATATAAGGCTCTATCATGCTTCATTGTCAGAGGAACTCTATGCACATACTGAAACCATGCTTTGCAACTCAAGTCAGTGGGTTTCTTGGAATGCATGGTTGAAGGTCTTTGATGCTGCAATTGGCAACATTGCCATTGTTACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

161

Amino Acids

18.41

Weight (kDa)

7.74

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24240 AT1G24240 AT4G11630 AT5G11750 AT5G11750
fragaria_vesca	FvH4_5g06380 FvH4_5g06380 FvH4_5g06380
malus_domestica	MD06G1165200.v1.1 MD14G1170700.v1.1
prunus_persica	Prupe.5G164800_v2.0.a1
pyrus_communis	pycom06g14770 pycom14g14250
rosa_chinensis	RchiOBHm_Chr1g0313261 RchiOBHm_Chr7g0192431 RchiOBHm_Chr7g0192461
rosa_laevigata	RLG00000004368
rosa_multiflora	Rmu_sc0003108.1_g000025
rosa_roxburghii	Rroxscaffold_3G00263010
rosa_rugosa	Rorug01G0316400 Rorug01G0316500 Rorug01G0316600 Rorug01G0316700 Rorug07G0001600
rosa_samantha	Rh1AG145800 Rh1AG325200 Rh1CG137200 Rh1DG152300 Rh7AG125400 Rh7BG127700 Rh7CG129400 Rh7DG129500
rosa_wichuraiana	Rw1G000120 Rw1G028840 Rw7G010140 Rw7G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	123, 184, 209, 439
AluBI	AGCT	4 cut(s)	64, 187, 219, 236
AluI	AGCT	4 cut(s)	64, 187, 219, 236
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	138
AlwNI	CAGNNNCTG	2 cut(s)	168, 199
ApeKI	GCWGC	2 cut(s)	223, 452
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	210, 439
BceAI	ACGGC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	224, 453
BlsI	GCNGC	2 cut(s)	225, 454
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	199, 391
Bsa29I	ATCGAT	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	95, 202
BseXI	GCAGC	2 cut(s)	210, 439
Bsh1236I	CGCG	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	433
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	94, 201
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	285
BssMI	GATC	1 cut(s)	12
Bst6I	CTCTTC	4 cut(s)	124, 132, 141, 185
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	221, 238
BstDEI	CTNAG	3 cut(s)	81, 188, 227
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	210, 439
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	221, 238
CaiI	CAGNNNCTG	2 cut(s)	168, 199
CfoI	GCGC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	3 cut(s)	353, 394, 432
CviJI	RGCY	9 cut(s)	31, 64, 86, 146, 187, 213, 219, 236, 346
CviKI_1	RGCY	9 cut(s)	31, 64, 86, 146, 187, 213, 219, 236, 346
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	81, 188, 227
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	4 cut(s)	124, 132, 141, 185
EarI	CTCTTC	4 cut(s)	124, 132, 141, 185
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	3 cut(s)	356, 397, 435
FaiI	YATR	9 cut(s)	305, 317, 339, 341, 354, 378, 384, 395, 433
FatI	CATG	3 cut(s)	352, 393, 431
Fnu4HI	GCNGC	2 cut(s)	224, 453
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	224, 453
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	224, 453
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	356, 397, 435
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	165, 177, 202
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	61, 73, 367
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	43, 433
HpyCH4V	TGCA	4 cut(s)	380, 402, 431, 455
HpyF3I	CTNAG	3 cut(s)	81, 188, 227
Hsp92II	CATG	3 cut(s)	356, 397, 435
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	68, 153, 154
Lsp1109I	GCAGC	2 cut(s)	210, 439
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	5 cut(s)	111, 119, 128, 172, 197
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	456, 481
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	123, 306
MnlI	CCTC	2 cut(s)	59, 361
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	32
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	78
NdeII	GATC	1 cut(s)	12
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	356, 397, 435
NsiI	ATGCAT	1 cut(s)	433
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	165, 202
PkrI	GCNGC	2 cut(s)	225, 454
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	168, 199
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	224, 453
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	51, 66, 189, 221, 238, 444
SfaNI	GCATC	1 cut(s)	439
SmlI	CTYRAG	2 cut(s)	214, 406
SmoI	CTYRAG	2 cut(s)	214, 406
Sse9I	AATT	2 cut(s)	456, 481
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	66
TaqI	TCGA	3 cut(s)	11, 39, 175
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	456, 481
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	165, 202
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	2 cut(s)	223, 452
TspDTI	ATGAA	2 cut(s)	25, 348
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.