Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0003350

Physical Location & Seq

Genomic Coordinates Forward (+)

93766 .. 98281

Gene Structure 4516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atggctcatttcagtccaatcggagcaaacccatttcgcggcggtgctgggtttagcggctccatagcttccaatggagttgggtctctctccaagtgttcttatcattcatgggctgcattcgctaaaacaggctctcaaactgagacattgacatgctcgagtagtgccatgctacttaggagtcctcaactaggcttgtttcgatggacagcagtttcaccacctttccccagcaggtgcatgacaacagtgggtaatacggttgaatcatcaacccaaaattcaatgactgagcttgatgcacctccccgcatcaaatttaagaggcttgataaaactgccaagcacataatgcagattctagataaggaagctgtacaggaagtgagggggcatagagaaatacctgatataaagcctggttatatcgtgcaactcagagtggaagtacccgacaacaagcggcgtgtttcagtcttgaaaggcattgtgatagcaagacgtaatgctggtctaaactctacattcagaatcaggaggctagttgctggagtcggggttgaatctctctttccactgtattcgcctaacataaaagagataaagatattggacaagaagaaagtgcggagggccaagctttactatctgagggacaaaatgaatgccctcaagaagcaatacaatgaagttcatcagcctttggaccttgctcttgtcttcgttggtacagagttgcaatcttcagatatttctgcaagcaaactctccaaacatgcttatccagctcttgtggacttgcttaaagtctctttcacacaatcaaatttctccatggcattcccctgtatttctgcatcagagaaggatgctatggaaagttctttagtgtcagggatgtcagagatttgtgggcagaattttggattcagtaatgtttgtttcttggagtcatgctcaatgtggggtgatgatgttcaaaagctttcagacctgcattcggtccatgattatattctttcgaggatggagaagagaccaaatggggaagcagatttggtggtgttctgccacaaaggatctgattctaaaaaggaactagaacccccacattcagagagtaaaaaattctctgagatggttagttttgtggatcagtctggggaaaaatatgcagttctatatgtttcagaccccattaaatcaatccaatatccttctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

409

Amino Acids

45.37

Weight (kDa)

9.21

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24240 AT1G24240 AT4G11630 AT5G11750 AT5G11750
fragaria_vesca	FvH4_5g06380 FvH4_5g06380 FvH4_5g06380
malus_domestica	MD06G1165200.v1.1 MD14G1170700.v1.1
prunus_persica	Prupe.5G164800_v2.0.a1
pyrus_communis	pycom06g14770 pycom14g14250
rosa_chinensis	RchiOBHm_Chr1g0313261 RchiOBHm_Chr7g0192431 RchiOBHm_Chr7g0192461
rosa_laevigata	RLG00000004368
rosa_multiflora	Rmu_sc0003108.1_g000025
rosa_roxburghii	Rroxscaffold_3G00263010
rosa_rugosa	Rorug01G0316400 Rorug01G0316500 Rorug01G0316600 Rorug01G0316700 Rorug07G0001600
rosa_samantha	Rh1AG145800 Rh1AG325200 Rh1CG137200 Rh1DG152300 Rh7AG125400 Rh7BG127700 Rh7CG129400 Rh7DG129500
rosa_wichuraiana	Rw1G000120 Rw1G028840 Rw7G010140 Rw7G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
Acc36I	ACCTGC	2 cut(s)	228, 1005
AccII	CGCG	1 cut(s)	39
AciI	CCGC	6 cut(s)	39, 42, 57, 313, 466, 631
AclWI	GGATC	2 cut(s)	1090, 1164
AcsI	RAATTY	5 cut(s)	283, 320, 829, 922, 1130
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	3 cut(s)	381, 453, 733
AfiI	CCNNNNNNNGG	3 cut(s)	38, 194, 1003
AgsI	TTSAA	5 cut(s)	269, 288, 484, 566, 983
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	6 cut(s)	68, 298, 377, 643, 791, 988
AluI	AGCT	6 cut(s)	68, 298, 377, 643, 791, 988
Alw26I	GTCTC	4 cut(s)	90, 140, 817, 1033
AlwI	GGATC	2 cut(s)	1090, 1164
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	5 cut(s)	283, 320, 829, 922, 1130
AspS9I	GGNCC	3 cut(s)	636, 709, 1006
AsuHPI	GGTGA	2 cut(s)	213, 983
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	709, 1006
BbsI	GAAGAC	1 cut(s)	715
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	201, 1024, 1135
BciT130I	CCWGG	1 cut(s)	423
BcoDI	GTCTC	4 cut(s)	90, 140, 817, 1033
BfaI	CTAG	4 cut(s)	194, 365, 545, 1103
BfuAI	ACCTGC	2 cut(s)	228, 1005
BisI	GCNGC	4 cut(s)	40, 58, 117, 467
BlsI	GCNGC	4 cut(s)	41, 59, 118, 468
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	2 cut(s)	709, 1006
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	636, 709, 1006
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	4 cut(s)	292, 324, 862, 869
BpiI	GAAGAC	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	659
BsaI	GGTCTC	2 cut(s)	90, 1033
BsaJI	CCNNGG	1 cut(s)	837
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 194, 1003
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	837
BseGI	GGATG	3 cut(s)	877, 906, 1035
BseLI	CCNNNNNNNGG	3 cut(s)	38, 194, 1003
BseMII	CTCAG	5 cut(s)	135, 285, 454, 644, 1128
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	2 cut(s)	47, 233
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	38, 194, 1003
BsmAI	GTCTC	4 cut(s)	90, 140, 817, 1033
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	4 cut(s)	119, 673, 842, 1000
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	2 cut(s)	90, 1033
BsoBI	CYCGRG	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	1082, 1156
Bsp19I	CCATGG	1 cut(s)	837
BspACI	CCGC	6 cut(s)	39, 42, 57, 313, 466, 631
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	5 cut(s)	136, 286, 453, 645, 1129
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	2 cut(s)	228, 1005
BspPI	GGATC	2 cut(s)	1090, 1164
BspTNI	GGTCTC	2 cut(s)	90, 1033
BsrGI	TGTACA	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	837
BssMI	GATC	2 cut(s)	1082, 1156
BssT1I	CCWWGG	1 cut(s)	837
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	253, 265, 582
Bst6I	CTCTTC	1 cut(s)	1031
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	6 cut(s)	144, 179, 294, 440, 653, 1137
BstDSI	CCRYGG	1 cut(s)	837
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	877, 906, 1035
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	1085, 1159
BstMAI	GTCTC	4 cut(s)	90, 140, 817, 1033
BstMBI	GATC	2 cut(s)	1082, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 355, 788
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	159, 782
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	837
BtsCI	GGATG	3 cut(s)	877, 906, 1035
BtsIMutI	CAGTG	2 cut(s)	258, 578
BveI	ACCTGC	2 cut(s)	228, 1005
Cac8I	GCNNGC	1 cut(s)	763
Cfr13I	GGNCC	3 cut(s)	636, 709, 1006
Csp6I	GTAC	3 cut(s)	380, 452, 732
CviAII	CATG	8 cut(s)	111, 156, 172, 244, 779, 838, 957, 1010
CviQI	GTAC	3 cut(s)	380, 452, 732
DdeI	CTNAG	6 cut(s)	144, 179, 294, 440, 653, 1137
DpnI	GATC	2 cut(s)	1084, 1158
DpnII	GATC	2 cut(s)	1082, 1156
Eam1104I	CTCTTC	1 cut(s)	1031
EarI	CTCTTC	1 cut(s)	1031
Eco130I	CCWWGG	1 cut(s)	837
Eco31I	GGTCTC	2 cut(s)	90, 1033
Eco47I	GGWCC	2 cut(s)	709, 1006
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	8 cut(s)	114, 159, 175, 247, 782, 841, 960, 1013
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	8 cut(s)	110, 155, 171, 243, 778, 837, 956, 1009
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	40, 58, 117, 467
FokI	GGATG	3 cut(s)	884, 913, 1042
Fsp4HI	GCNGC	4 cut(s)	40, 58, 117, 467
FspBI	CTAG	4 cut(s)	194, 365, 545, 1103
GluI	GCNGC	4 cut(s)	40, 58, 117, 467
GsaI	CCCAGC	2 cut(s)	51, 237
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	638
Hin1II	CATG	8 cut(s)	114, 159, 175, 247, 782, 841, 960, 1013
HindIII	AAGCTT	2 cut(s)	641, 986
HinfI	GANTC	9 cut(s)	184, 269, 361, 534, 555, 566, 930, 953, 1088
HphI	GGTGA	2 cut(s)	213, 983
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188III	TCNNGA	4 cut(s)	365, 481, 538, 676
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	2 cut(s)	862, 1230
HpyCH4III	ACNGT	3 cut(s)	253, 265, 582
HpyCH4IV	ACGT	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 355, 788
HpyF3I	CTNAG	6 cut(s)	144, 179, 294, 440, 653, 1137
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	8 cut(s)	114, 159, 175, 247, 782, 841, 960, 1013
Kzo9I	GATC	2 cut(s)	1082, 1156
LmnI	GCTCC	2 cut(s)	23, 65
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	4 cut(s)	292, 324, 862, 869
MaeI	CTAG	4 cut(s)	194, 365, 545, 1103
MaeII	ACGT	1 cut(s)	505
MalI	GATC	2 cut(s)	1084, 1158
MboI	GATC	2 cut(s)	1082, 1156
MboII	GAAGA	4 cut(s)	634, 715, 738, 1048
MflI	RGATCY	1 cut(s)	1082
MluCI	AATT	5 cut(s)	283, 320, 829, 922, 1130
MlyI	GAGTC	3 cut(s)	193, 564, 962
MnlI	CCTC	9 cut(s)	198, 318, 321, 384, 534, 627, 648, 683, 1020
MseI	TTAA	3 cut(s)	324, 807, 1203
MslI	CAYNNNNRTG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	423
Mva1269I	GAATGC	4 cut(s)	119, 673, 842, 1000
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	122, 355, 788
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	2 cut(s)	1082, 1156
NlaIII	CATG	8 cut(s)	114, 159, 175, 247, 782, 841, 960, 1013
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	159, 782
PaeR7I	CTCGAG	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	228
PctI	GAATGC	4 cut(s)	119, 673, 842, 1000
PfeI	GAWTC	6 cut(s)	269, 361, 534, 566, 930, 1088
PkrI	GCNGC	4 cut(s)	41, 59, 118, 468
PleI	GAGTC	3 cut(s)	192, 563, 961
PpsI	GAGTC	3 cut(s)	192, 563, 961
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	2 cut(s)	47, 233
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	3 cut(s)	636, 709, 1006
PspXI	VCTCGAGB	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	1082
RsaI	GTAC	3 cut(s)	381, 453, 733
RsaNI	GTAC	3 cut(s)	380, 452, 732
RseI	CAYNNNNRTG	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	324, 807, 1203
SatI	GCNGC	4 cut(s)	40, 58, 117, 467
Sau3AI	GATC	2 cut(s)	1082, 1156
Sau96I	GGNCC	3 cut(s)	636, 709, 1006
SchI	GAGTC	3 cut(s)	193, 564, 962
ScrFI	CCNGG	1 cut(s)	423
SfaNI	GCATC	4 cut(s)	292, 324, 862, 869
Sfr274I	CTCGAG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	709, 1006
SlaI	CTCGAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	160, 674
SmoI	CTYRAG	2 cut(s)	160, 674
Sse9I	AATT	5 cut(s)	283, 320, 829, 922, 1130
SsiI	CCGC	6 cut(s)	39, 42, 57, 313, 466, 631
SspMI	CTAG	4 cut(s)	194, 365, 545, 1103
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	3 cut(s)	253, 265, 582
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	161, 205, 1025
TaqII	GACCGA	1 cut(s)	994
TasI	AATT	5 cut(s)	283, 320, 829, 922, 1130
TatI	WGTACW	1 cut(s)	379
TauI	GCSGC	3 cut(s)	42, 60, 469
TfiI	GAWTC	6 cut(s)	269, 361, 534, 566, 930, 1088
Tru1I	TTAA	3 cut(s)	324, 807, 1203
Tru9I	TTAA	3 cut(s)	324, 807, 1203
TscAI	CASTG	2 cut(s)	258, 585
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	99, 680, 686, 705
TspRI	CASTG	2 cut(s)	258, 585
VpaK11BI	GGWCC	2 cut(s)	709, 1006
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	5 cut(s)	283, 320, 829, 922, 1130
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	2 cut(s)	159, 782
XhoI	CTCGAG	1 cut(s)	160
XspI	CTAG	4 cut(s)	194, 365, 545, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.