Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003350

Physical Location & Seq

Genomic Coordinates Forward (+)

14342350 .. 14345434

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G164800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAATCTTTAAGTGCGAGCATCCGTTTGGTCCAAAAGCAAAGAATCGACAGCTCAAAAATTGCTCATTTCAGATCAATTGGAGCTTACCCATTAACCAGTGGTTCTGGGTTCAGCTCGTTGGCTTCGGATGGCTTGGCCTCTGCCAAGATATTTGAGAGTTCATTGGGGTTTGCGTCTTCCAAAGGTTCCTTATTTCAGTCTCTTTCCAAGTTCCCTTATCGATCTTCGGCCTCATTCACTACAAGGGGCTTTCAAACTGAGACATCAACATCCTCGAGTAAGTCCATGTTATTCAAGAGTCCTCGACCAGGATTACTTCCACTGGAGACAGTTTCACCTCCTTTCCCCAGCAGGTGCATTACAACAGGGGTAAATCCTGTTGAATCGGCTACTCAAGATTCAACGATGTCTGGGTCTGACGTAGCTCCCCGCATCAAATTCAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGACAAGGAAGCTCTAGAGGAAGTGAGGGTGCAGAGAGAAATACCGGAAATAAAGCCTGGTTATATTGTGCAACTCAGAGTGGAAGTACCCGACAATAAGCGACGTGTTTCAATCTTGAAAGGCACTGTGATAGCAAGACGCAATGCTGGTCTGAACACTACAATTAGAATCAGGAGGCTCATGTCTGGGGTTGGGGTTGAATCTCTCCTTCCACTGTATTCCCCTAACATAAAGGAGATAAAGGTGCTGGACAAGAAGAGAGTGCGGAGGGCCAAGCTGTACTATATCCGGGACAAAATGAATGCACTTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

268

Amino Acids

29.58

Weight (kDa)

10.52

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24240 AT1G24240 AT4G11630 AT5G11750 AT5G11750
fragaria_vesca	FvH4_5g06380 FvH4_5g06380 FvH4_5g06380
malus_domestica	MD06G1165200.v1.1 MD14G1170700.v1.1
prunus_persica	Prupe.5G164800_v2.0.a1
pyrus_communis	pycom06g14770 pycom14g14250
rosa_chinensis	RchiOBHm_Chr1g0313261 RchiOBHm_Chr7g0192431 RchiOBHm_Chr7g0192461
rosa_laevigata	RLG00000004368
rosa_multiflora	Rmu_sc0003108.1_g000025
rosa_roxburghii	Rroxscaffold_3G00263010
rosa_rugosa	Rorug01G0316400 Rorug01G0316500 Rorug01G0316600 Rorug01G0316700 Rorug07G0001600
rosa_samantha	Rh1AG145800 Rh1AG325200 Rh1CG137200 Rh1DG152300 Rh7AG125400 Rh7BG127700 Rh7CG129400 Rh7DG129500
rosa_wichuraiana	Rw1G000120 Rw1G028840 Rw7G010140 Rw7G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	345
AciI	CCGC	2 cut(s)	433, 751
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	2 cut(s)	573, 767
AfiI	CCNNNNNNNGG	1 cut(s)	311
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	8 cut(s)	257, 298, 386, 405, 445, 597, 604, 686
AjiI	CACGTC	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	310, 541
AluBI	AGCT	6 cut(s)	54, 86, 117, 428, 497, 763
AluI	AGCT	6 cut(s)	54, 86, 117, 428, 497, 763
Alw26I	GTCTC	3 cut(s)	207, 257, 323
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	3 cut(s)	138, 231, 756
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	31, 756
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	171
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	312, 543
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	3 cut(s)	207, 257, 323
BfaI	CTAG	2 cut(s)	485, 500
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	345
Bme1390I	CCNGG	3 cut(s)	312, 543, 776
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	31, 756
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	312, 543, 776
BmsI	GCATC	2 cut(s)	30, 444
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	99, 330
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	2 cut(s)	312, 543
BseCI	ATCGAT	1 cut(s)	223
BseGI	GGATG	3 cut(s)	21, 136, 272
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	252, 574
BseNI	ACTGG	2 cut(s)	99, 330
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	140, 233, 758
BshVI	ATCGAT	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	530, 775
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	3 cut(s)	207, 257, 323
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	3 cut(s)	140, 233, 758
BsoBI	CYCGRG	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	74, 224
BspACI	CCGC	2 cut(s)	433, 751
BspANI	GGCC	3 cut(s)	140, 233, 758
BspCNI	CTCAG	2 cut(s)	253, 573
BspDI	ATCGAT	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	99, 330
BssMI	GATC	2 cut(s)	74, 224
Bst2UI	CCWGG	2 cut(s)	312, 543
Bst4CI	ACNGT	3 cut(s)	334, 613, 702
Bst6I	CTCTTC	1 cut(s)	737
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	261, 560
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	21, 136, 272
BstKTI	GATC	2 cut(s)	77, 227
BstMAI	GTCTC	3 cut(s)	207, 257, 323
BstMBI	GATC	2 cut(s)	74, 224
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	2 cut(s)	312, 543
BstSCI	CCNGG	3 cut(s)	310, 541, 774
BstV2I	GAAGAC	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	140, 233, 758
BsuTUI	ATCGAT	1 cut(s)	223
BtrI	CACGTC	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	21, 136, 272
BtsIMutI	CAGTG	4 cut(s)	106, 323, 609, 698
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	31, 756
ClaI	ATCGAT	1 cut(s)	223
CseI	GACGC	2 cut(s)	165, 633
Csp6I	GTAC	2 cut(s)	572, 766
CviAII	CATG	2 cut(s)	289, 667
CviQI	GTAC	2 cut(s)	572, 766
DdeI	CTNAG	2 cut(s)	261, 560
DpnI	GATC	2 cut(s)	76, 226
DpnII	GATC	2 cut(s)	74, 224
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	310, 541
FaeI	CATG	2 cut(s)	292, 670
FaiI	YATR	6 cut(s)	290, 473, 549, 668, 716, 771
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	2 cut(s)	288, 666
FauI	CCCGC	1 cut(s)	440
FokI	GGATG	3 cut(s)	8, 143, 259
FspBI	CTAG	2 cut(s)	485, 500
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	140, 233, 758
HapII	CCGG	2 cut(s)	530, 775
HgaI	GACGC	2 cut(s)	165, 633
Hin1II	CATG	2 cut(s)	292, 670
HinfI	GANTC	7 cut(s)	45, 301, 386, 401, 481, 654, 686
HpaII	CCGG	2 cut(s)	530, 775
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	5 cut(s)	74, 130, 421, 563, 639
Hpy188III	TCNNGA	7 cut(s)	298, 398, 445, 485, 500, 601, 658
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	3 cut(s)	334, 613, 702
HpyCH4IV	ACGT	2 cut(s)	423, 589
HpyCH4V	TGCA	6 cut(s)	4, 360, 478, 517, 556, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	2 cut(s)	261, 560
HpySE526I	ACGT	2 cut(s)	423, 589
Hsp92II	CATG	2 cut(s)	292, 670
Kzo9I	GATC	2 cut(s)	74, 224
LmnI	GCTCC	2 cut(s)	83, 433
LweI	GCATC	2 cut(s)	30, 444
MaeI	CTAG	2 cut(s)	485, 500
MaeII	ACGT	2 cut(s)	423, 589
MalI	GATC	2 cut(s)	76, 226
MboI	GATC	2 cut(s)	74, 224
MboII	GAAGA	3 cut(s)	171, 219, 754
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	4 cut(s)	60, 78, 440, 648
MlyI	GAGTC	1 cut(s)	310
MseI	TTAA	3 cut(s)	11, 95, 795
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	2 cut(s)	530, 775
MspR9I	CCNGG	3 cut(s)	312, 543, 776
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	312, 543
MwoI	GCNNNNNNNGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	776
NdeII	GATC	2 cut(s)	74, 224
NlaIII	CATG	2 cut(s)	292, 670
NlaIV	GGNNCC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	6 cut(s)	45, 386, 401, 481, 654, 686
PfoI	TCCNGGA	1 cut(s)	774
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	310, 541
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	310, 541
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	31, 756
PspXI	VCTCGAGB	1 cut(s)	277
RsaI	GTAC	2 cut(s)	573, 767
RsaNI	GTAC	2 cut(s)	572, 766
SaqAI	TTAA	3 cut(s)	11, 95, 795
Sau3AI	GATC	2 cut(s)	74, 224
Sau96I	GGNCC	2 cut(s)	31, 756
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	312, 543, 776
SfaNI	GCATC	2 cut(s)	30, 444
Sfr274I	CTCGAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	277
SmlI	CTYRAG	3 cut(s)	277, 396, 794
SmoI	CTYRAG	3 cut(s)	277, 396, 794
Sse9I	AATT	4 cut(s)	60, 78, 440, 648
SsiI	CCGC	2 cut(s)	433, 751
SspMI	CTAG	2 cut(s)	485, 500
StyD4I	CCNGG	3 cut(s)	310, 541, 774
TaaI	ACNGT	3 cut(s)	334, 613, 702
TaiI	ACGT	2 cut(s)	426, 592
TaqI	TCGA	4 cut(s)	48, 223, 278, 307
TasI	AATT	4 cut(s)	60, 78, 440, 648
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	6 cut(s)	45, 386, 401, 481, 654, 686
Tru1I	TTAA	3 cut(s)	11, 95, 795
Tru9I	TTAA	3 cut(s)	11, 95, 795
TscAI	CASTG	4 cut(s)	106, 330, 616, 705
TspDTI	ATGAA	2 cut(s)	153, 800
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	4 cut(s)	106, 330, 616, 705
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	440
XbaI	TCTAGA	2 cut(s)	484, 499
XhoI	CTCGAG	1 cut(s)	277
XspI	CTAG	2 cut(s)	485, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.