Rh7BG127700

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003350
Physical Location & Seq
Forward (+)
9446421 .. 9449634
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG127700.1

Sequence Viewer

Length: 738 bp
ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCAAAGCTCAAAGATGGCTCATTTCAGTCCAATCGGAGCAAACCCATGTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCGATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGTCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCGAGTAGTGCCTTGCTAATCAGGAGTCCTCAACCAGGCTTGTTTCAATGGCCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTTGGTAATACGGTTGAATCAGCAACTCAAGATTCAATAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCACTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTCTACTATCTCAGGGACAAAATGAATGCTCTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

245

Amino Acids

27.02

Weight (kDa)

10.31

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 149 - 240 8.9e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 89, 245
AgsI TTSAA 5 cut(s) 257, 320, 339, 535, 617
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 2 cut(s) 244, 472
AluBI AGCT 5 cut(s) 45, 119, 349, 428, 694
AluI AGCT 5 cut(s) 45, 119, 349, 428, 694
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 141, 191
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 2 cut(s) 260, 687
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 211
BalI TGGCCA 1 cut(s) 262
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 46, 119
BciT130I CCWGG 2 cut(s) 246, 474
BcoDI GTCTC 2 cut(s) 141, 191
BfaI CTAG 2 cut(s) 416, 596
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 4 cut(s) 91, 109, 168, 518
BlsI GCNGC 4 cut(s) 92, 110, 169, 519
Bme1390I CCNGG 2 cut(s) 246, 474
BmeT110I CYCGRG 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 246, 474
BmsI GCATC 3 cut(s) 281, 343, 375
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 2 cut(s) 315, 710
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 245
Bse1I ACTGG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 246, 474
BseLI CCNNNNNNNGG 2 cut(s) 89, 245
BseMII CTCAG 4 cut(s) 186, 336, 505, 718
BseNI ACTGG 1 cut(s) 669
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 2 cut(s) 98, 284
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 262, 689
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 33, 722
BslI CCNNNNNNNGG 2 cut(s) 89, 245
BsmAI GTCTC 2 cut(s) 141, 191
BsmFI GGGAC 2 cut(s) 33, 722
BsmI GAATGC 2 cut(s) 170, 724
BsnI GGCC 2 cut(s) 262, 689
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 188, 212
BspACI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
BspANI GGCC 2 cut(s) 262, 689
BspCNI CTCAG 4 cut(s) 187, 337, 504, 717
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 246, 474
Bst4CI ACNGT 3 cut(s) 304, 316, 633
BstAPI GCANNNNNTGC 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 4 cut(s) 195, 345, 491, 704
BstENI CCTNNNNNAGG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 141, 191
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNI CCWGG 2 cut(s) 246, 474
BstSCI CCNGG 2 cut(s) 244, 472
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 262, 689
BtrI CACGTC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 1 cut(s) 503
CviAII CATG 2 cut(s) 84, 162
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 4 cut(s) 195, 345, 491, 704
DraI TTTAAA 1 cut(s) 570
EaeI YGGCCR 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 244, 472
EcoT22I ATGCAT 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 2 cut(s) 87, 165
FaiI YATR 9 cut(s) 36, 85, 116, 163, 296, 404, 467, 480, 647
FaqI GGGAC 2 cut(s) 33, 722
FatI CATG 2 cut(s) 83, 161
FauI CCCGC 2 cut(s) 10, 371
Fnu4HI GCNGC 4 cut(s) 91, 109, 168, 518
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 4 cut(s) 91, 109, 168, 518
FspBI CTAG 2 cut(s) 416, 596
GluI GCNGC 4 cut(s) 91, 109, 168, 518
GsaI CCCAGC 2 cut(s) 102, 288
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 2 cut(s) 262, 689
Hin1II CATG 2 cut(s) 87, 165
HinfI GANTC 7 cut(s) 235, 320, 335, 412, 585, 606, 617
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 4 cut(s) 74, 124, 494, 584
Hpy188III TCNNGA 6 cut(s) 232, 332, 416, 532, 589, 727
HpyCH4III ACNGT 3 cut(s) 304, 316, 633
HpyCH4IV ACGT 2 cut(s) 206, 556
HpyCH4V TGCA 6 cut(s) 4, 170, 294, 356, 409, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 4 cut(s) 195, 345, 491, 704
HpySE526I ACGT 2 cut(s) 206, 556
Hsp92II CATG 2 cut(s) 87, 165
LmnI GCTCC 2 cut(s) 74, 116
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 3 cut(s) 281, 343, 375
MaeI CTAG 2 cut(s) 416, 596
MaeII ACGT 2 cut(s) 206, 556
MboII GAAGA 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 188, 212
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 2 cut(s) 244, 615
MnlI CCTC 6 cut(s) 249, 369, 372, 435, 585, 678
Mox20I TGGCCA 1 cut(s) 262
Mph1103I ATGCAT 1 cut(s) 296
MscI TGGCCA 1 cut(s) 262
MseI TTAA 3 cut(s) 11, 375, 569
MslI CAYNNNNRTG 1 cut(s) 205
Msp20I TGGCCA 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 246, 474
MssI GTTTAAAC 1 cut(s) 570
Mva1269I GAATGC 2 cut(s) 170, 724
MvaI CCWGG 2 cut(s) 246, 474
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 406
NlaIII CATG 2 cut(s) 87, 165
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 211
PctI GAATGC 2 cut(s) 170, 724
PfeI GAWTC 5 cut(s) 320, 335, 412, 585, 617
PkrI GCNGC 4 cut(s) 92, 110, 169, 519
PleI GAGTC 2 cut(s) 243, 614
PmeI GTTTAAAC 1 cut(s) 570
PpsI GAGTC 2 cut(s) 243, 614
Psp6I CCWGG 2 cut(s) 244, 472
PspFI CCCAGC 2 cut(s) 98, 284
PspGI CCWGG 2 cut(s) 244, 472
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 211
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 3 cut(s) 11, 375, 569
SatI GCNGC 4 cut(s) 91, 109, 168, 518
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 2 cut(s) 244, 615
ScrFI CCNGG 2 cut(s) 246, 474
SduI GDGCHC 2 cut(s) 188, 212
SfaNI GCATC 3 cut(s) 281, 343, 375
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 211, 330, 725
SmoI CTYRAG 3 cut(s) 211, 330, 725
Sse9I AATT 1 cut(s) 371
SsiI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
SspMI CTAG 2 cut(s) 416, 596
StyD4I CCNGG 2 cut(s) 244, 472
TaaI ACNGT 3 cut(s) 304, 316, 633
TaiI ACGT 2 cut(s) 209, 559
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 371
TauI GCSGC 3 cut(s) 93, 111, 520
TfiI GAWTC 5 cut(s) 320, 335, 412, 585, 617
Tru1I TTAA 3 cut(s) 11, 375, 569
Tru9I TTAA 3 cut(s) 11, 375, 569
TscAI CASTG 1 cut(s) 636
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 150, 731
TspRI CASTG 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 371
XbaI TCTAGA 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 211
XspI CTAG 2 cut(s) 416, 596
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.