Rw1G000120

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003350
Physical Location & Seq
Forward (+)
159815 .. 169690
9876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000120.1

Sequence Viewer

Length: 639 bp
ATGACTACATATTTTACCATAACTCGCAACTATTGGTGTAAAAGCAGTAACTTTTATTCTGATTGTAGTAATTACTTCAAAAACTATACCATTTACAAGATTACCAACCATTTTACAATTCCGACAACATTTACTAAAATGGGCTCTGAAACTGAGACATGCATTGACGTGCTCTCAAGTAGTGCCATGCTATTCAGGAGTTCTCAACCAGGCTTGTACTGTCGATGGGCAGCAGTTTCACCACCTTTTCCCAGCAGATGCATGACTACAGTGGGTAATACGCTTGATGCACCTCTCCGCATCAAATTTAAGAGGCTTGATAAAACTGGCAAGCACAAAATGCAGATTCTAGATAAGGAAGCTGTAGAGGAAGTGAGGAGGCAGAGAGAAAAACCTGATATAAAGCCTGGTTATTTCGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAACCTCTCTTTCCACTGGAGATAAAAGTACTGGACAAGAAGAAAGTGAGGAGGGCGAAGCTTTACTATCTCATGGACAAAATGAATGCTCTAAAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

212

Amino Acids

24.62

Weight (kDa)

10.04

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 141 - 206 8.9e-17 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 298, 436
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 3 cut(s) 218, 423, 564
AgsI TTSAA 3 cut(s) 79, 454, 536
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 208, 406
AluBI AGCT 2 cut(s) 362, 595
AluI AGCT 2 cut(s) 362, 595
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 231
AsuII TTCGAA 1 cut(s) 417
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 210, 408
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 350, 515
BfmI CTRYAG 2 cut(s) 267, 363
BisI GCNGC 2 cut(s) 231, 437
BlsI GCNGC 2 cut(s) 232, 438
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 2 cut(s) 210, 408
BmgBI CACGTC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 210, 408
BmsI GCATC 3 cut(s) 248, 277, 309
BpmI CTGGAG 2 cut(s) 543, 572
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse1I ACTGG 3 cut(s) 331, 555, 570
BseBI CCWGG 2 cut(s) 210, 408
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 331, 555, 570
BseRI GAGGAG 2 cut(s) 391, 598
BseXI GCAGC 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 625
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 146, 174
BspACI CCGC 2 cut(s) 298, 436
BspCNI CTCAG 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 417
BsrI ACTGG 3 cut(s) 331, 555, 570
Bst2UI CCWGG 2 cut(s) 210, 408
Bst4CI ACNGT 2 cut(s) 221, 271
BstAPI GCANNNNNTGC 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 2 cut(s) 210, 408
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 208, 406
BstSFI CTRYAG 2 cut(s) 267, 363
BstV1I GCAGC 1 cut(s) 242
BtrI CACGTC 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 276, 548
Cac8I GCNNGC 1 cut(s) 332
Csp6I GTAC 3 cut(s) 217, 422, 563
CviAII CATG 4 cut(s) 159, 187, 262, 607
CviJI RGCY 7 cut(s) 144, 213, 316, 362, 406, 514, 595
CviKI_1 RGCY 7 cut(s) 144, 213, 316, 362, 406, 514, 595
CviQI GTAC 3 cut(s) 217, 422, 563
DdeI CTNAG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 208, 406
EcoT22I ATGCAT 2 cut(s) 164, 263
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 4 cut(s) 162, 190, 265, 610
FaiI YATR 8 cut(s) 10, 20, 87, 160, 188, 263, 401, 608
FatI CATG 4 cut(s) 158, 186, 261, 606
Fnu4HI GCNGC 2 cut(s) 231, 437
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 231, 437
FspBI CTAG 2 cut(s) 350, 515
GluI GCNGC 2 cut(s) 231, 437
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 2 cut(s) 543, 572
Hin1II CATG 4 cut(s) 162, 190, 265, 610
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 3 cut(s) 346, 504, 525
HphI GGTGA 1 cut(s) 231
Hpy188I TCNGA 4 cut(s) 61, 123, 148, 503
Hpy188III TCNNGA 4 cut(s) 196, 350, 451, 508
HpyCH4III ACNGT 2 cut(s) 221, 271
HpyCH4IV ACGT 2 cut(s) 168, 475
HpyCH4V TGCA 4 cut(s) 162, 261, 290, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 168, 475
Hsp92II CATG 4 cut(s) 162, 190, 265, 610
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 3 cut(s) 248, 277, 309
MaeI CTAG 2 cut(s) 350, 515
MaeII ACGT 2 cut(s) 168, 475
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 146, 174
MluCI AATT 3 cut(s) 70, 117, 305
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 9 cut(s) 303, 306, 361, 369, 372, 504, 549, 576, 579
Mph1103I ATGCAT 2 cut(s) 164, 263
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 210, 408
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 210, 408
MwoI GCNNNNNNNGC 1 cut(s) 340
NlaIII CATG 4 cut(s) 162, 190, 265, 610
NsiI ATGCAT 2 cut(s) 164, 263
NspI RCATGY 1 cut(s) 162
NspV TTCGAA 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 346, 504
PkrI GCNGC 2 cut(s) 232, 438
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 208, 406
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 2 cut(s) 208, 406
RsaI GTAC 3 cut(s) 218, 423, 564
RsaNI GTAC 3 cut(s) 217, 422, 563
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 231, 437
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 2 cut(s) 210, 408
SduI GDGCHC 2 cut(s) 146, 174
SetI ASST 8 cut(s) 171, 247, 295, 364, 397, 478, 541, 597
SfaNI GCATC 3 cut(s) 248, 277, 309
SfcI CTRYAG 2 cut(s) 267, 363
SfuI TTCGAA 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 3 cut(s) 70, 117, 305
SsiI CCGC 2 cut(s) 298, 436
SspMI CTAG 2 cut(s) 350, 515
StyD4I CCNGG 2 cut(s) 208, 406
TaaI ACNGT 2 cut(s) 221, 271
TaiI ACGT 2 cut(s) 171, 478
TaqI TCGA 2 cut(s) 223, 417
TasI AATT 3 cut(s) 70, 117, 305
TatI WGTACW 2 cut(s) 216, 562
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 2 cut(s) 346, 504
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 276, 555
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 632
TspRI CASTG 2 cut(s) 276, 555
XapI RAATTY 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 1 cut(s) 162
XspI CTAG 2 cut(s) 350, 515
ZrmI AGTACT 1 cut(s) 564
Zsp2I ATGCAT 2 cut(s) 164, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.