Rh1CG137200

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003350
Physical Location & Seq
Reverse (-)
30047209 .. 30050090
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG137200.1

Sequence Viewer

Length: 627 bp
ATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAAGTAGTGCCTTGCTAATTAGGAGTCCTCAACCAGGCTTGCTTCAATGGGCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTGGGTAATACGGTTGAATCAGCAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

208

Amino Acids

22.61

Weight (kDa)

10.49

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 126 - 208 2.2e-24 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 6 cut(s) 39, 42, 57, 313, 445, 610
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 38, 194
AgsI TTSAA 5 cut(s) 206, 269, 288, 463, 545
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 2 cut(s) 193, 400
AluBI AGCT 3 cut(s) 68, 298, 622
AluI AGCT 3 cut(s) 68, 298, 622
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 90, 140
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 2 cut(s) 116, 212
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 213
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 103, 224
BciT130I CCWGG 2 cut(s) 195, 402
BcoDI GTCTC 2 cut(s) 90, 140
BfaI CTAG 1 cut(s) 524
BisI GCNGC 5 cut(s) 40, 58, 117, 213, 446
BlsI GCNGC 5 cut(s) 41, 59, 118, 214, 447
Bme1390I CCNGG 2 cut(s) 195, 402
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 195, 402
BmsI GCATC 3 cut(s) 230, 292, 324
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 145, 264
BsaI GGTCTC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 194
Bse1I ACTGG 1 cut(s) 597
BseBI CCWGG 2 cut(s) 195, 402
BseLI CCNNNNNNNGG 2 cut(s) 38, 194
BseMII CTCAG 3 cut(s) 135, 285, 433
BseNI ACTGG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 103, 224
BseYI CCCAGC 2 cut(s) 47, 233
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 617
BsiHKAI GWGCWC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 38, 194
BsmAI GTCTC 2 cut(s) 90, 140
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 617
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 137, 161
BspACI CCGC 6 cut(s) 39, 42, 57, 313, 445, 610
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 3 cut(s) 136, 286, 432
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 195, 402
Bst4CI ACNGT 2 cut(s) 253, 265
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 144, 294, 419
BstENI CCTNNNNNAGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 90, 140
BstMWI GCNNNNNNNGC 2 cut(s) 122, 355
BstNI CCWGG 2 cut(s) 195, 402
BstSCI CCNGG 2 cut(s) 193, 400
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 103, 224
BsuRI GGCC 1 cut(s) 617
BtrI CACGTC 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 615
Csp6I GTAC 1 cut(s) 431
CviAII CATG 1 cut(s) 111
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 144, 294, 419
DraI TTTAAA 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 193, 400
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 1 cut(s) 114
FaiI YATR 7 cut(s) 65, 112, 245, 353, 395, 408, 575
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 5 cut(s) 40, 58, 117, 213, 446
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 40, 58, 117, 213, 446
FspBI CTAG 1 cut(s) 524
GluI GCNGC 5 cut(s) 40, 58, 117, 213, 446
GsaI CCCAGC 2 cut(s) 51, 237
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 1 cut(s) 617
Hin1II CATG 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 6 cut(s) 184, 269, 284, 513, 534, 545
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 23, 422, 512
Hpy188III TCNNGA 3 cut(s) 281, 460, 517
HpyCH4III ACNGT 2 cut(s) 253, 265
HpyCH4IV ACGT 2 cut(s) 155, 484
HpyCH4V TGCA 5 cut(s) 119, 243, 305, 358, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 355
HpyF3I CTNAG 3 cut(s) 144, 294, 419
HpySE526I ACGT 2 cut(s) 155, 484
Hsp92II CATG 1 cut(s) 114
LmnI GCTCC 2 cut(s) 23, 65
Lsp1109I GCAGC 2 cut(s) 103, 224
LweI GCATC 3 cut(s) 230, 292, 324
MaeI CTAG 1 cut(s) 524
MaeII ACGT 2 cut(s) 155, 484
MboII GAAGA 1 cut(s) 613
MhlI GDGCHC 2 cut(s) 137, 161
MluCI AATT 2 cut(s) 177, 320
MlyI GAGTC 2 cut(s) 193, 543
MnlI CCTC 6 cut(s) 198, 318, 321, 363, 513, 606
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 3 cut(s) 324, 497, 625
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 195, 402
MssI GTTTAAAC 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 2 cut(s) 195, 402
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 122, 355
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 245
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 4 cut(s) 269, 284, 513, 545
PkrI GCNGC 5 cut(s) 41, 59, 118, 214, 447
PleI GAGTC 2 cut(s) 192, 542
PmeI GTTTAAAC 1 cut(s) 498
PpsI GAGTC 2 cut(s) 192, 542
Psp6I CCWGG 2 cut(s) 193, 400
PspFI CCCAGC 2 cut(s) 47, 233
PspGI CCWGG 2 cut(s) 193, 400
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 615
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 324, 497, 625
SatI GCNGC 5 cut(s) 40, 58, 117, 213, 446
Sau96I GGNCC 1 cut(s) 615
SchI GAGTC 2 cut(s) 193, 543
ScrFI CCNGG 2 cut(s) 195, 402
SduI GDGCHC 2 cut(s) 137, 161
SetI ASST 8 cut(s) 70, 158, 229, 300, 310, 391, 487, 624
SfaNI GCATC 3 cut(s) 230, 292, 324
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 160, 279
SmoI CTYRAG 2 cut(s) 160, 279
Sse9I AATT 2 cut(s) 177, 320
SsiI CCGC 6 cut(s) 39, 42, 57, 313, 445, 610
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 193, 400
TaaI ACNGT 2 cut(s) 253, 265
TaiI ACGT 2 cut(s) 158, 487
TasI AATT 2 cut(s) 177, 320
TauI GCSGC 3 cut(s) 42, 60, 448
TfiI GAWTC 4 cut(s) 269, 284, 513, 545
Tru1I TTAA 3 cut(s) 324, 497, 625
Tru9I TTAA 3 cut(s) 324, 497, 625
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 116, 212
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 1 cut(s) 320
XspI CTAG 1 cut(s) 524
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.