Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003350

Physical Location & Seq

Genomic Coordinates Reverse (-)

9420747 .. 9423321

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCAAAGCTCAAAGATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAAGTAGTGCCTTGCTAATTAGGAGTCCTCAACCAGGCTTGCTTCAATGGGCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTGGGTAATACGGTTGAATCAGCAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAACGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGTATTCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

169

Amino Acids

18.12

Weight (kDa)

9.81

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24240 AT1G24240 AT4G11630 AT5G11750 AT5G11750
fragaria_vesca	FvH4_5g06380 FvH4_5g06380 FvH4_5g06380
malus_domestica	MD06G1165200.v1.1 MD14G1170700.v1.1
prunus_persica	Prupe.5G164800_v2.0.a1
pyrus_communis	pycom06g14770 pycom14g14250
rosa_chinensis	RchiOBHm_Chr1g0313261 RchiOBHm_Chr7g0192431 RchiOBHm_Chr7g0192461
rosa_laevigata	RLG00000004368
rosa_multiflora	Rmu_sc0003108.1_g000025
rosa_roxburghii	Rroxscaffold_3G00263010
rosa_rugosa	Rorug01G0316400 Rorug01G0316500 Rorug01G0316600 Rorug01G0316700 Rorug07G0001600
rosa_samantha	Rh1AG145800 Rh1AG325200 Rh1CG137200 Rh1DG152300 Rh7AG125400 Rh7BG127700 Rh7CG129400 Rh7DG129500
rosa_wichuraiana	Rw1G000120 Rw1G028840 Rw7G010140 Rw7G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	6 cut(s)	17, 25, 90, 93, 108, 364
AcsI	RAATTY	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	89, 245
AgsI	TTSAA	3 cut(s)	257, 320, 339
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	244, 472
AluBI	AGCT	4 cut(s)	45, 119, 349, 428
AluI	AGCT	4 cut(s)	45, 119, 349, 428
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	141, 191
ApeKI	GCWGC	2 cut(s)	167, 263
ApoI	RAATTY	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	154, 275
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	246, 474
BcoDI	GTCTC	2 cut(s)	141, 191
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	4 cut(s)	91, 109, 168, 264
BlsI	GCNGC	4 cut(s)	92, 110, 169, 265
Bme1390I	CCNGG	2 cut(s)	246, 474
BmgBI	CACGTC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	246, 474
BmsI	GCATC	3 cut(s)	281, 343, 375
BpuEI	CTTGAG	2 cut(s)	196, 315
BsaI	GGTCTC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 245
BseBI	CCWGG	2 cut(s)	246, 474
BseLI	CCNNNNNNNGG	2 cut(s)	89, 245
BseMII	CTCAG	3 cut(s)	186, 336, 505
BseXI	GCAGC	2 cut(s)	154, 275
BseYI	CCCAGC	2 cut(s)	98, 284
Bsh1236I	CGCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	89, 245
BsmAI	GTCTC	2 cut(s)	141, 191
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	188, 212
BspACI	CCGC	6 cut(s)	17, 25, 90, 93, 108, 364
BspCNI	CTCAG	3 cut(s)	187, 337, 504
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	246, 474
Bst4CI	ACNGT	2 cut(s)	304, 316
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	195, 345, 491
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	141, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 406
BstNI	CCWGG	2 cut(s)	246, 474
BstSCI	CCNGG	2 cut(s)	244, 472
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	154, 275
BtrI	CACGTC	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	251
CviAII	CATG	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	195, 345, 491
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	244, 472
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	1 cut(s)	165
FaiI	YATR	7 cut(s)	36, 116, 163, 296, 404, 467, 480
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	1 cut(s)	161
FauI	CCCGC	2 cut(s)	10, 371
Fnu4HI	GCNGC	4 cut(s)	91, 109, 168, 264
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	91, 109, 168, 264
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	4 cut(s)	91, 109, 168, 264
GsaI	CCCAGC	2 cut(s)	102, 288
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	4 cut(s)	235, 320, 335, 412
HphI	GGTGA	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	74, 494
Hpy188III	TCNNGA	2 cut(s)	332, 416
HpyCH4III	ACNGT	2 cut(s)	304, 316
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	4, 170, 294, 356, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 406
HpyF3I	CTNAG	3 cut(s)	195, 345, 491
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	74, 116
LpnPI	CCDG	7 cut(s)	84, 231, 258, 298, 459, 474, 486
Lsp1109I	GCAGC	2 cut(s)	154, 275
LweI	GCATC	3 cut(s)	281, 343, 375
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	188, 212
MluCI	AATT	2 cut(s)	228, 371
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	249, 369, 372, 435
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	2 cut(s)	11, 375
MslI	CAYNNNNRTG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	246, 474
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	246, 474
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	173, 406
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	320, 335, 412
PkrI	GCNGC	4 cut(s)	92, 110, 169, 265
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	244, 472
PspFI	CCCAGC	2 cut(s)	98, 284
PspGI	CCWGG	2 cut(s)	244, 472
PspN4I	GGNNCC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	11, 375
SatI	GCNGC	4 cut(s)	91, 109, 168, 264
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	246, 474
SduI	GDGCHC	2 cut(s)	188, 212
SetI	ASST	8 cut(s)	47, 121, 209, 280, 351, 361, 430, 463
SfaNI	GCATC	3 cut(s)	281, 343, 375
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	211, 330
SmoI	CTYRAG	2 cut(s)	211, 330
Sse9I	AATT	2 cut(s)	228, 371
SsiI	CCGC	6 cut(s)	17, 25, 90, 93, 108, 364
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	244, 472
TaaI	ACNGT	2 cut(s)	304, 316
TaiI	ACGT	1 cut(s)	209
TasI	AATT	2 cut(s)	228, 371
TauI	GCSGC	2 cut(s)	93, 111
TfiI	GAWTC	3 cut(s)	320, 335, 412
Tru1I	TTAA	2 cut(s)	11, 375
Tru9I	TTAA	2 cut(s)	11, 375
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	167, 263
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	415
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.