RLG00000004368

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003350
Physical Location & Seq
Reverse (-)
58761134 .. 58764130
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004368

Sequence Viewer

Length: 732 bp
ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCAAAGCTCAAAGGTGGCTCATTTCAGTCCAATCGGAGCAAACCCTTTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCCGCATTCGCTAAATCTCAAACTGAGACATTGACATGCTCGAGTAGTGCCATGCTACTGAGGAGTCCTCAATTAGGCTTGTTTCGATGGACAGCAGTTTCACCACCTTTCCCCAGCAGGTGCATGACAACAGTGGGTAATACGGTTGAATCATCAACCCAAAATTCAATGACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTACAGGAAGTGAGGGGGCATAGAGAAATACCTGATATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCACTGTATTCGCCTAACATAAAGGAGATAAAGATATTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCACTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

244

Amino Acids

27.04

Weight (kDa)

10.63

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 142 - 238 7.2e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccII CGCG 1 cut(s) 90
AciI CCGC 9 cut(s) 17, 25, 90, 93, 108, 168, 358, 511, 676
AcsI RAATTY 2 cut(s) 328, 365
AfaI GTAC 2 cut(s) 426, 498
AfiI CCNNNNNNNGG 2 cut(s) 89, 239
AgsI TTSAA 4 cut(s) 314, 333, 529, 611
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 5 cut(s) 45, 119, 343, 422, 688
AluI AGCT 5 cut(s) 45, 119, 343, 422, 688
Alw26I GTCTC 2 cut(s) 141, 185
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 165, 681
ApoI RAATTY 2 cut(s) 328, 365
AspS9I GGNCC 2 cut(s) 165, 681
AsuHPI GGTGA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 205
BccI CCATC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 141, 185
BfaI CTAG 2 cut(s) 410, 590
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 4 cut(s) 91, 109, 168, 512
BlsI GCNGC 4 cut(s) 92, 110, 169, 513
Bme1390I CCNGG 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 165, 681
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 2 cut(s) 337, 369
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 704
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 239
BseBI CCWGG 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 89, 239
BseMII CTCAG 5 cut(s) 180, 215, 330, 499, 712
BseRI GAGGAG 1 cut(s) 241
BseYI CCCAGC 2 cut(s) 98, 278
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 167, 683
BsiHKCI CYCGRG 1 cut(s) 205
BslFI GGGAC 2 cut(s) 33, 716
BslI CCNNNNNNNGG 2 cut(s) 89, 239
BsmAI GTCTC 2 cut(s) 141, 185
BsmFI GGGAC 2 cut(s) 33, 716
BsmI GAATGC 2 cut(s) 170, 718
BsnI GGCC 2 cut(s) 167, 683
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 424
BspACI CCGC 9 cut(s) 17, 25, 90, 93, 108, 168, 358, 511, 676
BspANI GGCC 2 cut(s) 167, 683
BspCNI CTCAG 5 cut(s) 181, 216, 331, 498, 711
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 298, 310, 627
BstAPI GCANNNNNTGC 1 cut(s) 400
BstAUI TGTACA 1 cut(s) 424
BstDEI CTNAG 5 cut(s) 189, 224, 339, 485, 698
BstENI CCTNNNNNAGG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 141, 185
BstMWI GCNNNNNNNGC 2 cut(s) 173, 400
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 466
BstUI CGCG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 167, 683
BtsIMutI CAGTG 2 cut(s) 303, 623
BveI ACCTGC 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 165, 681
Csp6I GTAC 2 cut(s) 425, 497
CviAII CATG 4 cut(s) 162, 201, 217, 289
CviQI GTAC 2 cut(s) 425, 497
DdeI CTNAG 5 cut(s) 189, 224, 339, 485, 698
Eco31I GGTCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 466
FaeI CATG 4 cut(s) 165, 204, 220, 292
FaqI GGGAC 2 cut(s) 33, 716
FatI CATG 4 cut(s) 161, 200, 216, 288
FauI CCCGC 2 cut(s) 10, 365
Fnu4HI GCNGC 4 cut(s) 91, 109, 168, 512
Fsp4HI GCNGC 4 cut(s) 91, 109, 168, 512
FspBI CTAG 2 cut(s) 410, 590
GluI GCNGC 4 cut(s) 91, 109, 168, 512
GsaI CCCAGC 2 cut(s) 102, 282
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 167, 683
Hin1II CATG 4 cut(s) 165, 204, 220, 292
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 6 cut(s) 229, 314, 406, 579, 600, 611
HphI GGTGA 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 74, 488, 578
Hpy188III TCNNGA 4 cut(s) 410, 526, 583, 721
HpyCH4III ACNGT 3 cut(s) 298, 310, 627
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 6 cut(s) 4, 288, 350, 403, 481, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 400
HpyF3I CTNAG 5 cut(s) 189, 224, 339, 485, 698
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 4 cut(s) 165, 204, 220, 292
LmnI GCTCC 2 cut(s) 74, 116
LweI GCATC 2 cut(s) 337, 369
MaeI CTAG 2 cut(s) 410, 590
MaeII ACGT 1 cut(s) 550
MboII GAAGA 1 cut(s) 679
MluCI AATT 3 cut(s) 236, 328, 365
MlyI GAGTC 2 cut(s) 238, 609
MnlI CCTC 7 cut(s) 219, 243, 363, 366, 429, 579, 672
MseI TTAA 2 cut(s) 11, 369
MslI CAYNNNNRTG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 468
Mva1269I GAATGC 2 cut(s) 170, 718
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 173, 400
NlaIII CATG 4 cut(s) 165, 204, 220, 292
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 205
PaqCI CACCTGC 1 cut(s) 273
PctI GAATGC 2 cut(s) 170, 718
PfeI GAWTC 4 cut(s) 314, 406, 579, 611
PkrI GCNGC 4 cut(s) 92, 110, 169, 513
PleI GAGTC 2 cut(s) 237, 608
PpsI GAGTC 2 cut(s) 237, 608
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 2 cut(s) 98, 278
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 165, 681
PspXI VCTCGAGB 1 cut(s) 205
RsaI GTAC 2 cut(s) 426, 498
RsaNI GTAC 2 cut(s) 425, 497
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 11, 369
SatI GCNGC 4 cut(s) 91, 109, 168, 512
Sau96I GGNCC 2 cut(s) 165, 681
SchI GAGTC 2 cut(s) 238, 609
ScrFI CCNGG 1 cut(s) 468
SfaNI GCATC 2 cut(s) 337, 369
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 205, 719
SmoI CTYRAG 2 cut(s) 205, 719
Sse9I AATT 3 cut(s) 236, 328, 365
SsiI CCGC 9 cut(s) 17, 25, 90, 93, 108, 168, 358, 511, 676
SspMI CTAG 2 cut(s) 410, 590
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 3 cut(s) 298, 310, 627
TaiI ACGT 1 cut(s) 553
TaqI TCGA 2 cut(s) 206, 250
TasI AATT 3 cut(s) 236, 328, 365
TatI WGTACW 1 cut(s) 424
TauI GCSGC 4 cut(s) 93, 111, 170, 514
TfiI GAWTC 4 cut(s) 314, 406, 579, 611
Tru1I TTAA 2 cut(s) 11, 369
Tru9I TTAA 2 cut(s) 11, 369
TscAI CASTG 2 cut(s) 303, 630
TspDTI ATGAA 2 cut(s) 150, 725
TspRI CASTG 2 cut(s) 303, 630
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 2 cut(s) 328, 365
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 205
XspI CTAG 2 cut(s) 410, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.