AT5G11750

ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003350
Physical Location & Seq
Forward (+)
3787230 .. 3789212
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11750.1

Sequence Viewer

Length: 690 bp
ATGCAATCGATTCGTAGCAGTACAAGGTTGCTTCAGAGGCATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTTCTTCTTCTGGAAGCTGGTCTGAAAATGAATCGAGGATGGTAGGATTTGATTCTTTCCCTTGTACCAGAGCTGCGACATATCTCATTAGCTCGTTGAAAAATGTCGGTTTTTCCTCTTCGGCGATACCTAAACAAGACTTTAAGTATTCGTTGAGGTGCTTTTCTACTACCGGAGATTCTGTTCAATCTACTCCTCAAGGATCCCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAAATCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTTCAGCTTAAAGTGGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGCTGGAGTGGGCGTTGAATCCATGTTCCCCTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGAGCCAAGCTCTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

229

Amino Acids

26.03

Weight (kDa)

10.4

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 128 - 223 3.4e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 2 cut(s) 331, 345
AclWI GGATC 2 cut(s) 279, 292
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 2 cut(s) 22, 148
AgsI TTSAA 3 cut(s) 181, 269, 569
AjnI CCWGG 1 cut(s) 424
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 5 cut(s) 99, 155, 174, 442, 646
AluI AGCT 5 cut(s) 99, 155, 174, 442, 646
AlwI GGATC 2 cut(s) 279, 292
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 679
AxyI CCTNAGG 2 cut(s) 599, 656
BamHI GGATCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 59, 115
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 426
BisI GCNGC 2 cut(s) 156, 332
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 2 cut(s) 157, 333
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 576
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 264, 662
Bsa29I ATCGAT 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 549, 579
Bse21I CCTNAGG 2 cut(s) 599, 656
BseBI CCWGG 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 8
BseGI GGATG 1 cut(s) 126
BseMII CTCAG 5 cut(s) 282, 326, 450, 590, 670
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 676
Bsp143I GATC 1 cut(s) 284
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 2 cut(s) 331, 345
BspCNI CTCAG 5 cut(s) 283, 325, 451, 591, 669
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 279, 292
BspQI GCTCTTC 1 cut(s) 631
BssMI GATC 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 426
Bst6I CTCTTC 3 cut(s) 69, 205, 631
BstAPI GCANNNNNTGC 1 cut(s) 358
BstDEI CTNAG 7 cut(s) 291, 312, 348, 401, 459, 599, 656
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 37, 358
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 8
Bsu36I CCTNAGG 2 cut(s) 599, 656
BsuTUI ATCGAT 1 cut(s) 8
BtsCI GGATG 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 2 cut(s) 21, 147
CviAII CATG 1 cut(s) 574
CviJI RGCY 9 cut(s) 99, 155, 174, 334, 424, 442, 547, 641, 646
CviKI_1 RGCY 9 cut(s) 99, 155, 174, 334, 424, 442, 547, 641, 646
CviQI GTAC 2 cut(s) 21, 147
DdeI CTNAG 7 cut(s) 291, 312, 348, 401, 459, 599, 656
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
Eam1104I CTCTTC 3 cut(s) 69, 205, 631
EarI CTCTTC 3 cut(s) 69, 205, 631
Eco57I CTGAAG 1 cut(s) 17
Eco81I CCTNAGG 2 cut(s) 599, 656
EcoRII CCWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 577
FaiI YATR 5 cut(s) 163, 354, 356, 500, 575
FaqI GGGAC 1 cut(s) 674
FatI CATG 1 cut(s) 573
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 156, 332
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 156, 332
GluI GCNGC 2 cut(s) 156, 332
GsuI CTGGAG 1 cut(s) 576
HapII CCGG 1 cut(s) 255
Hin1II CATG 1 cut(s) 577
HinfI GANTC 8 cut(s) 10, 113, 134, 260, 293, 318, 409, 569
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 2 cut(s) 370, 619
Hpy188I TCNGA 4 cut(s) 36, 106, 298, 315
Hpy188III TCNNGA 3 cut(s) 93, 413, 679
Hpy8I GTNNAC 2 cut(s) 370, 619
HpyAV CCTTC 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 4, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 358
HpyF3I CTNAG 7 cut(s) 291, 312, 348, 401, 459, 599, 656
Hsp92II CATG 1 cut(s) 577
Kzo9I GATC 1 cut(s) 284
LguI GCTCTTC 1 cut(s) 631
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 9 cut(s) 56, 69, 72, 75, 78, 81, 192, 637, 648
MflI RGATCY 1 cut(s) 284
MluCI AATT 1 cut(s) 537
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 6 cut(s) 225, 327, 444, 522, 609, 688
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 37, 358
NdeII GATC 1 cut(s) 284
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 631
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 7 cut(s) 10, 113, 134, 260, 318, 409, 569
PkrI GCNGC 2 cut(s) 157, 333
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 2 cut(s) 22, 148
RsaNI GTAC 2 cut(s) 21, 147
SapI GCTCTTC 1 cut(s) 631
SaqAI TTAA 6 cut(s) 225, 327, 444, 522, 609, 688
SatI GCNGC 2 cut(s) 156, 332
Sau3AI GATC 1 cut(s) 284
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 426
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 2 cut(s) 279, 677
SmoI CTYRAG 2 cut(s) 279, 677
Sse9I AATT 1 cut(s) 537
SsiI CCGC 2 cut(s) 331, 345
StyD4I CCNGG 1 cut(s) 424
TaqI TCGA 2 cut(s) 8, 116
TasI AATT 1 cut(s) 537
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 7 cut(s) 10, 113, 134, 260, 318, 409, 569
Tru1I TTAA 6 cut(s) 225, 327, 444, 522, 609, 688
Tru9I TTAA 6 cut(s) 225, 327, 444, 522, 609, 688
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.