Rh7CG129400

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003350
Physical Location & Seq
Forward (+)
10197771 .. 10200447
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG129400.1

Sequence Viewer

Length: 738 bp
ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCAAAGCTCAAAGATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCGATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCTAAAACAGGCTCTCAAACTGAGACATTGACATGCTCGAGTAGTGCCATGCTACTTAGGAGTCCTCAACTAGGCTTGTTTCGATGGACAGCAGTTTCACCACCTTTCCCCAGCAGGTGCATGACAATAGTGGGTAATACGGTTGAATCATCAACCCAAAATTCAACGACTGAGCTTGATGCACCTCCCCACATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTACAGGAAGTGAGGGGGCATAGAGAAATACCTGATATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCACTGTATTCGCCTAACATAAAAGAGATAAAGATATTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCACTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

245

Amino Acids

27.2

Weight (kDa)

10.46

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 144 - 240 7.3e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 279
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 17, 25, 90, 93, 108, 517, 682
AcsI RAATTY 2 cut(s) 334, 371
AfaI GTAC 2 cut(s) 432, 504
AfiI CCNNNNNNNGG 2 cut(s) 89, 245
AgsI TTSAA 4 cut(s) 320, 339, 535, 617
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 45, 119, 349, 428, 694
AluI AGCT 5 cut(s) 45, 119, 349, 428, 694
Alw26I GTCTC 2 cut(s) 141, 191
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 334, 371
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 211
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 46, 119, 252
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 141, 191
BfaI CTAG 3 cut(s) 245, 416, 596
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 4 cut(s) 91, 109, 168, 518
BlsI GCNGC 4 cut(s) 92, 110, 169, 519
Bme1390I CCNGG 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 245
BseBI CCWGG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 89, 245
BseMII CTCAG 4 cut(s) 186, 336, 505, 718
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 2 cut(s) 98, 284
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 33, 722
BslI CCNNNNNNNGG 2 cut(s) 89, 245
BsmAI GTCTC 2 cut(s) 141, 191
BsmFI GGGAC 2 cut(s) 33, 722
BsmI GAATGC 2 cut(s) 170, 724
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 430
BspACI CCGC 7 cut(s) 17, 25, 90, 93, 108, 517, 682
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 4 cut(s) 187, 337, 504, 717
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 316, 633
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 430
BstDEI CTNAG 5 cut(s) 195, 230, 345, 491, 704
BstENI CCTNNNNNAGG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 141, 191
BstMWI GCNNNNNNNGC 2 cut(s) 173, 406
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 472
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 629
BveI ACCTGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 2 cut(s) 431, 503
CviAII CATG 4 cut(s) 162, 207, 223, 295
CviQI GTAC 2 cut(s) 431, 503
DdeI CTNAG 5 cut(s) 195, 230, 345, 491, 704
Eco31I GGTCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 472
FaeI CATG 4 cut(s) 165, 210, 226, 298
FaqI GGGAC 2 cut(s) 33, 722
FatI CATG 4 cut(s) 161, 206, 222, 294
FauI CCCGC 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 91, 109, 168, 518
Fsp4HI GCNGC 4 cut(s) 91, 109, 168, 518
FspBI CTAG 3 cut(s) 245, 416, 596
GluI GCNGC 4 cut(s) 91, 109, 168, 518
GsaI CCCAGC 2 cut(s) 102, 288
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 689
Hin1II CATG 4 cut(s) 165, 210, 226, 298
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 6 cut(s) 235, 320, 412, 585, 606, 617
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 4 cut(s) 74, 124, 494, 584
Hpy188III TCNNGA 4 cut(s) 416, 532, 589, 727
HpyCH4III ACNGT 2 cut(s) 316, 633
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 7 cut(s) 4, 170, 294, 356, 409, 487, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 406
HpyF3I CTNAG 5 cut(s) 195, 230, 345, 491, 704
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 4 cut(s) 165, 210, 226, 298
LmnI GCTCC 2 cut(s) 74, 116
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 343
MaeI CTAG 3 cut(s) 245, 416, 596
MaeII ACGT 1 cut(s) 556
MboII GAAGA 1 cut(s) 685
MluCI AATT 2 cut(s) 334, 371
MlyI GAGTC 2 cut(s) 244, 615
MnlI CCTC 6 cut(s) 249, 369, 372, 435, 585, 678
MseI TTAA 2 cut(s) 11, 375
MslI CAYNNNNRTG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 2 cut(s) 170, 724
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 173, 406
NlaIII CATG 4 cut(s) 165, 210, 226, 298
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 279
PctI GAATGC 2 cut(s) 170, 724
PfeI GAWTC 4 cut(s) 320, 412, 585, 617
PkrI GCNGC 4 cut(s) 92, 110, 169, 519
PleI GAGTC 2 cut(s) 243, 614
PpsI GAGTC 2 cut(s) 243, 614
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 2 cut(s) 98, 284
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 211
RsaI GTAC 2 cut(s) 432, 504
RsaNI GTAC 2 cut(s) 431, 503
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 2 cut(s) 11, 375
SatI GCNGC 4 cut(s) 91, 109, 168, 518
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 2 cut(s) 244, 615
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 1 cut(s) 343
Sfr274I CTCGAG 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 211, 725
SmoI CTYRAG 2 cut(s) 211, 725
Sse9I AATT 2 cut(s) 334, 371
SsiI CCGC 7 cut(s) 17, 25, 90, 93, 108, 517, 682
SspMI CTAG 3 cut(s) 245, 416, 596
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 316, 633
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 212, 256
TasI AATT 2 cut(s) 334, 371
TatI WGTACW 1 cut(s) 430
TauI GCSGC 3 cut(s) 93, 111, 520
TfiI GAWTC 4 cut(s) 320, 412, 585, 617
Tru1I TTAA 2 cut(s) 11, 375
Tru9I TTAA 2 cut(s) 11, 375
TscAI CASTG 1 cut(s) 636
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 150, 731
TspRI CASTG 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 334, 371
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 211
XspI CTAG 3 cut(s) 245, 416, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.