RchiOBHm_Chr7g0192461

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003350
Physical Location & Seq
Forward (+)
10934091 .. 10938665
4575 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17203

Sequence Viewer

Length: 600 bp
ATGACTTGTTTGATAGAGCAGAAGACTAGAGTTTCTGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCAAGTAGTGCCTTGCTAATTAGGAGTCCTCAACCAGGCTTGCTTCAATGGGCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTGGGTAATACGGTTGAATCAGCAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCTCTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

199

Amino Acids

22.31

Weight (kDa)

10.26

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 103 - 194 5.3e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 226, 379, 544
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 5 cut(s) 119, 182, 201, 397, 479
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 2 cut(s) 106, 334
AluBI AGCT 3 cut(s) 211, 290, 556
AluI AGCT 3 cut(s) 211, 290, 556
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 549
AsuHPI GGTGA 1 cut(s) 126
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 108, 336
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 3 cut(s) 27, 278, 458
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 126, 380
BlsI GCNGC 2 cut(s) 127, 381
Bme1390I CCNGG 2 cut(s) 108, 336
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 549
BmrFI CCNGG 2 cut(s) 108, 336
BmsI GCATC 3 cut(s) 143, 205, 237
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 486
BpuEI CTTGAG 3 cut(s) 58, 177, 572
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 108, 336
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 4 cut(s) 48, 198, 367, 580
BseNI ACTGG 1 cut(s) 531
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 50, 74
BspACI CCGC 3 cut(s) 226, 379, 544
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 4 cut(s) 49, 199, 366, 579
BsrI ACTGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 108, 336
Bst4CI ACNGT 2 cut(s) 166, 178
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 57, 207, 353, 566
BstENI CCTNNNNNAGG 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 2 cut(s) 108, 336
BstSCI CCNGG 2 cut(s) 106, 334
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 551
BtrI CACGTC 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 549
Csp6I GTAC 1 cut(s) 365
CviJI RGCY 9 cut(s) 48, 111, 211, 244, 290, 334, 457, 551, 556
CviKI_1 RGCY 9 cut(s) 48, 111, 211, 244, 290, 334, 457, 551, 556
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 4 cut(s) 57, 207, 353, 566
DraI TTTAAA 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 106, 334
EcoT22I ATGCAT 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 50
FaiI YATR 5 cut(s) 158, 266, 329, 342, 509
FaqI GGGAC 1 cut(s) 584
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 126, 380
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 126, 380
FspBI CTAG 3 cut(s) 27, 278, 458
GluI GCNGC 2 cut(s) 126, 380
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 1 cut(s) 551
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 7 cut(s) 97, 182, 197, 274, 447, 468, 479
HphI GGTGA 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 356, 446
Hpy188III TCNNGA 5 cut(s) 194, 278, 394, 451, 589
HpyCH4III ACNGT 2 cut(s) 166, 178
HpyCH4IV ACGT 2 cut(s) 68, 418
HpyCH4V TGCA 4 cut(s) 156, 218, 271, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 4 cut(s) 57, 207, 353, 566
HpySE526I ACGT 2 cut(s) 68, 418
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 3 cut(s) 143, 205, 237
MaeI CTAG 3 cut(s) 27, 278, 458
MaeII ACGT 2 cut(s) 68, 418
MboII GAAGA 2 cut(s) 34, 547
MhlI GDGCHC 2 cut(s) 50, 74
MluCI AATT 2 cut(s) 90, 233
MlyI GAGTC 2 cut(s) 106, 477
MnlI CCTC 6 cut(s) 111, 231, 234, 297, 447, 540
Mph1103I ATGCAT 1 cut(s) 158
MseI TTAA 2 cut(s) 237, 431
MslI CAYNNNNRTG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 108, 336
MssI GTTTAAAC 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 2 cut(s) 108, 336
MwoI GCNNNNNNNGC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 158
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 5 cut(s) 182, 197, 274, 447, 479
PkrI GCNGC 2 cut(s) 127, 381
PleI GAGTC 2 cut(s) 105, 476
PmeI GTTTAAAC 1 cut(s) 432
PpsI GAGTC 2 cut(s) 105, 476
Psp6I CCWGG 2 cut(s) 106, 334
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 106, 334
PspPI GGNCC 1 cut(s) 549
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 67
SaqAI TTAA 2 cut(s) 237, 431
SatI GCNGC 2 cut(s) 126, 380
Sau96I GGNCC 1 cut(s) 549
SchI GAGTC 2 cut(s) 106, 477
ScrFI CCNGG 2 cut(s) 108, 336
SduI GDGCHC 2 cut(s) 50, 74
SetI ASST 8 cut(s) 71, 142, 213, 223, 292, 325, 421, 558
SfaNI GCATC 3 cut(s) 143, 205, 237
SfcI CTRYAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 3 cut(s) 73, 192, 587
SmoI CTYRAG 3 cut(s) 73, 192, 587
Sse9I AATT 2 cut(s) 90, 233
SsiI CCGC 3 cut(s) 226, 379, 544
SspMI CTAG 3 cut(s) 27, 278, 458
StyD4I CCNGG 2 cut(s) 106, 334
TaaI ACNGT 2 cut(s) 166, 178
TaiI ACGT 2 cut(s) 71, 421
TasI AATT 2 cut(s) 90, 233
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 5 cut(s) 182, 197, 274, 447, 479
Tru1I TTAA 2 cut(s) 237, 431
Tru9I TTAA 2 cut(s) 237, 431
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 593
TspRI CASTG 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 277
XspI CTAG 3 cut(s) 27, 278, 458
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.