FvH4_5g06380

50S ribosomal protein L19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003350
Physical Location & Seq
Reverse (-)
3740404 .. 3744062
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06380.t2

Sequence Viewer

Length: 729 bp
ATGCATTCTTTAACTGCTGGCCTCCGATTTCTCCATAGGCAAACCTCAAAGATCGCTCATTTCAGTTCAACCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCGATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATTTGCCAAAACGGGCTCTCAAACTGAGACATTGACGTGCTCGAGTACTGCCATGTTACTGAAGAGTCCTCAACCAGGCTTGTTTCAATGGACAGGAATTTCACCACCTTTCCCCTGCAGGGGCATGACAACAGTGGGTAATACAATTGAATCAGCAACTCAAGATTTGACGACTGAGCTTGATGCACCTTCCCGCGTCAAATTTAAGAGGCTTGATAAAACTGCGAAGCACATAATGCAGATCCTAGATAAAGAAGCTGTGCAGGAAGTGAGGGAGCAGAGAGAAATCCCTGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTCTAAACTCAACATTCAGACTCAGGAGGCTAGTCGCTGGAGTCGGGGTTGAATCTCTCTTTCCACTATATTCACCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGAAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCACTCAAGAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L19

Protein Analysis

243

Amino Acids

26.86

Weight (kDa)

10.26

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 141 - 237 5.5e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 90, 357
AciI CCGC 5 cut(s) 90, 93, 108, 355, 508
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 2 cut(s) 258, 362
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 2 cut(s) 208, 495
AfiI CCNNNNNNNGG 4 cut(s) 89, 236, 280, 281
AgsI TTSAA 5 cut(s) 69, 248, 311, 526, 608
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 235, 463
AluBI AGCT 4 cut(s) 119, 340, 419, 685
AluI AGCT 4 cut(s) 119, 340, 419, 685
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 141, 182
AlwI GGATC 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 19, 678
ApoI RAATTY 2 cut(s) 258, 362
AspS9I GGNCC 1 cut(s) 678
AsuHPI GGTGA 2 cut(s) 255, 621
AvaI CYCGRG 1 cut(s) 202
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 237, 465
BcoDI GTCTC 2 cut(s) 141, 182
BfaI CTAG 2 cut(s) 407, 587
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 3 cut(s) 91, 109, 509
BlsI GCNGC 3 cut(s) 92, 110, 510
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 237, 465
BmeT110I CYCGRG 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 237, 465
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 306, 701
BsaI GGTCTC 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 236, 280, 281
Bse1I ACTGG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 237, 465
BseLI CCNNNNNNNGG 4 cut(s) 89, 236, 280, 281
BseMII CTCAG 5 cut(s) 177, 327, 496, 592, 709
BseNI ACTGG 1 cut(s) 660
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 2 cut(s) 90, 357
BshFI GGCC 2 cut(s) 21, 680
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 4 cut(s) 89, 236, 280, 281
BsmAI GTCTC 2 cut(s) 141, 182
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 2 cut(s) 4, 715
BsnI GGCC 2 cut(s) 21, 680
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 179, 203
Bsp143I GATC 2 cut(s) 51, 402
BspACI CCGC 5 cut(s) 90, 93, 108, 355, 508
BspANI GGCC 2 cut(s) 21, 680
BspCNI CTCAG 5 cut(s) 178, 328, 495, 591, 708
BspFNI CGCG 2 cut(s) 90, 357
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 281
BspPI GGATC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 660
BssMI GATC 2 cut(s) 51, 402
Bst2UI CCWGG 2 cut(s) 237, 465
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 5 cut(s) 186, 336, 482, 578, 695
BstENI CCTNNNNNAGG 1 cut(s) 234
BstFNI CGCG 2 cut(s) 90, 357
BstKTI GATC 2 cut(s) 54, 405
BstMAI GTCTC 2 cut(s) 141, 182
BstMBI GATC 2 cut(s) 51, 402
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 2 cut(s) 237, 465
BstSCI CCNGG 2 cut(s) 235, 463
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 2 cut(s) 90, 357
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 2 cut(s) 21, 680
BtrI CACGTC 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 678
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 207, 494
CviAII CATG 2 cut(s) 214, 286
CviQI GTAC 2 cut(s) 207, 494
DdeI CTNAG 5 cut(s) 186, 336, 482, 578, 695
DpnI GATC 2 cut(s) 53, 404
DpnII GATC 2 cut(s) 51, 402
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 235, 463
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 2 cut(s) 217, 289
FaiI YATR 9 cut(s) 36, 116, 215, 287, 395, 458, 471, 625, 638
FaqI GGGAC 1 cut(s) 713
FatI CATG 2 cut(s) 213, 285
FauI CCCGC 1 cut(s) 362
Fnu4HI GCNGC 3 cut(s) 91, 109, 509
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 91, 109, 509
FspBI CTAG 2 cut(s) 407, 587
GluI GCNGC 3 cut(s) 91, 109, 509
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 2 cut(s) 21, 680
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 217, 289
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 5 cut(s) 226, 311, 576, 597, 608
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 255, 621
Hpy188I TCNGA 4 cut(s) 26, 124, 485, 575
Hpy188III TCNNGA 4 cut(s) 323, 523, 580, 718
HpyAV CCTTC 2 cut(s) 360, 669
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 197, 547
HpyCH4V TGCA 7 cut(s) 4, 279, 347, 400, 424, 478, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 5 cut(s) 186, 336, 482, 578, 695
HpySE526I ACGT 2 cut(s) 197, 547
Hsp92II CATG 2 cut(s) 217, 289
Kzo9I GATC 2 cut(s) 51, 402
LmnI GCTCC 3 cut(s) 74, 116, 436
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 407, 587
MaeII ACGT 2 cut(s) 197, 547
MaeIII GTNAC 1 cut(s) 216
MalI GATC 2 cut(s) 53, 404
MboI GATC 2 cut(s) 51, 402
MboII GAAGA 2 cut(s) 235, 676
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 179, 203
MluCI AATT 3 cut(s) 258, 306, 362
MlyI GAGTC 3 cut(s) 235, 570, 606
MnlI CCTC 6 cut(s) 32, 55, 240, 363, 426, 576
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 11, 366
MslI CAYNNNNRTG 1 cut(s) 196
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 237, 465
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 4, 715
MvaI CCWGG 2 cut(s) 237, 465
MvnI CGCG 2 cut(s) 90, 357
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 2 cut(s) 51, 402
NlaIII CATG 2 cut(s) 217, 289
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 202
PctI GAATGC 2 cut(s) 4, 715
PfeI GAWTC 2 cut(s) 311, 608
PkrI GCNGC 3 cut(s) 92, 110, 510
PleI GAGTC 3 cut(s) 234, 570, 605
PpsI GAGTC 3 cut(s) 234, 570, 605
Psp6I CCWGG 2 cut(s) 235, 463
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 235, 463
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 678
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 2 cut(s) 208, 495
RsaNI GTAC 2 cut(s) 207, 494
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 2 cut(s) 11, 366
SatI GCNGC 3 cut(s) 91, 109, 509
Sau3AI GATC 2 cut(s) 51, 402
Sau96I GGNCC 1 cut(s) 678
SbfI CCTGCAGG 1 cut(s) 281
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 3 cut(s) 235, 570, 606
ScrFI CCNGG 2 cut(s) 237, 465
SdaI CCTGCAGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 179, 203
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 3 cut(s) 202, 321, 716
SmoI CTYRAG 3 cut(s) 202, 321, 716
Sse8387I CCTGCAGG 1 cut(s) 281
Sse9I AATT 3 cut(s) 258, 306, 362
SsiI CCGC 5 cut(s) 90, 93, 108, 355, 508
SspMI CTAG 2 cut(s) 407, 587
StyD4I CCNGG 2 cut(s) 235, 463
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 200, 550
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 258, 306, 362
TatI WGTACW 1 cut(s) 206
TauI GCSGC 3 cut(s) 93, 111, 511
TfiI GAWTC 2 cut(s) 311, 608
Tru1I TTAA 2 cut(s) 11, 366
Tru9I TTAA 2 cut(s) 11, 366
TscAI CASTG 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 150, 722
TspRI CASTG 1 cut(s) 300
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 2 cut(s) 258, 362
XhoI CTCGAG 1 cut(s) 202
XspI CTAG 2 cut(s) 407, 587
ZrmI AGTACT 1 cut(s) 208
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.