Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

9099994 .. 9103644

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAACTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGCAAATTGTTCGAGTACTCCTCTGAATCTTGCATGGAGAAGGTACTAGAACGCTACGAGAGGTATTCTTACGCCGAGAGACAGCTGATTGCACCTGACTCTCACGTTAATGCACAGACGAACTGGTCAATGGAGTATAGCAGGCTTAAGGCCAAGATTGAGCTTTTGGAGAGAAACCAAAGGCATTATCTGGGAGAAGAGTTGGAACCAATGAGCCTCAAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTAAGCACATTCGCTCCAGAAAAAATCAACTCATGAATGAGTCCCTCAACCACCTCCAAAGAAAGGAGAAGGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAAACATCCTAAGGACAAAACAAACCCAATGTGAGCAGCTGAACCGCAGCGTCGACGATGTACCACAGCCACAACCATTTCAACACCCCCATCTTTACATGATCGCTCATCAGACTTCTCCTTTCCTAAATATGGGTGGTTTGTACCAAGAAGAAGACCAAACGGCGATGAGGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATTACCTTGGCTGTTACGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0009933 GO:0010022 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

255

Amino Acids

30.19

Weight (kDa)

8.24

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.7e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 174	2.4e-30	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	2 cut(s)	577, 762
AclWI	GGATC	2 cut(s)	384, 726
AfaI	GTAC	4 cut(s)	170, 198, 594, 677
AfiI	CCNNNNNNNGG	3 cut(s)	388, 475, 664
AflII	CTTAAG	2 cut(s)	299, 413
AgsI	TTSAA	5 cut(s)	20, 25, 88, 614, 731
AluBI	AGCT	5 cut(s)	95, 238, 316, 400, 571
AluI	AGCT	5 cut(s)	95, 238, 316, 400, 571
Alw26I	GTCTC	2 cut(s)	226, 398
AlwI	GGATC	2 cut(s)	384, 726
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	4 cut(s)	394, 397, 568, 579
AxyI	CCTNAGG	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	133, 693
BbvI	GCAGC	4 cut(s)	406, 409, 580, 591
BccI	CCATC	1 cut(s)	630
BceAI	ACGGC	1 cut(s)	711
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcoDI	GTCTC	2 cut(s)	226, 398
BfaI	CTAG	1 cut(s)	200
BfrI	CTTAAG	2 cut(s)	299, 413
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	5 cut(s)	395, 398, 569, 580, 762
BlsI	GCNGC	5 cut(s)	396, 399, 570, 581, 763
BmcAI	AGTACT	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	360
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	133, 693
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	2 cut(s)	410, 412
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	356, 422
BsaJI	CCNNGG	2 cut(s)	123, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 475, 664
Bse1I	ACTGG	2 cut(s)	82, 281
Bse21I	CCTNAGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	123, 748
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	388, 475, 664
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	82, 281
BseRI	GAGGAG	2 cut(s)	163, 718
BseXI	GCAGC	4 cut(s)	406, 409, 580, 591
BshFI	GGCC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	388, 475, 664
BsmAI	GTCTC	2 cut(s)	226, 398
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	42, 102, 376, 633, 718
BspACI	CCGC	2 cut(s)	577, 762
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	2 cut(s)	384, 726
BspTI	CTTAAG	2 cut(s)	299, 413
BsrI	ACTGG	2 cut(s)	82, 281
BssECI	CCNNGG	2 cut(s)	123, 748
BssMI	GATC	5 cut(s)	42, 102, 376, 633, 718
BssT1I	CCWWGG	1 cut(s)	748
Bst6I	CTCTTC	2 cut(s)	20, 345
BstAFI	CTTAAG	2 cut(s)	299, 413
BstC8I	GCNNGC	2 cut(s)	296, 506
BstDEI	CTNAG	2 cut(s)	96, 542
BstF5I	GGATG	1 cut(s)	537
BstKTI	GATC	5 cut(s)	45, 105, 379, 636, 721
BstMAI	GTCTC	2 cut(s)	226, 398
BstMBI	GATC	5 cut(s)	42, 102, 376, 633, 718
BstNSI	RCATGY	1 cut(s)	508
BstV1I	GCAGC	4 cut(s)	406, 409, 580, 591
BstV2I	GAAGAC	2 cut(s)	133, 693
BstX2I	RGATCY	3 cut(s)	102, 376, 718
BstYI	RGATCY	3 cut(s)	102, 376, 718
Bsu36I	CCTNAGG	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	713
BtsCI	GGATG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	296, 506
CciI	TCATGA	1 cut(s)	444
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	169, 197, 593, 676
CviAII	CATG	4 cut(s)	187, 445, 505, 631
CviQI	GTAC	4 cut(s)	169, 197, 593, 676
DdeI	CTNAG	2 cut(s)	96, 542
DpnI	GATC	5 cut(s)	44, 104, 378, 635, 720
DpnII	GATC	5 cut(s)	42, 102, 376, 633, 718
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	20, 345
EarI	CTCTTC	2 cut(s)	20, 345
Eco130I	CCWWGG	1 cut(s)	748
Eco81I	CCTNAGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	4 cut(s)	190, 448, 508, 634
FaiI	YATR	7 cut(s)	150, 188, 291, 446, 506, 632, 665
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	186, 444, 504, 630
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	5 cut(s)	395, 398, 569, 580, 762
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	5 cut(s)	395, 398, 569, 580, 762
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	5 cut(s)	395, 398, 569, 580, 762
GsuI	CTGGAG	2 cut(s)	410, 412
HaeIII	GGCC	1 cut(s)	305
HgaI	GACGC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	190, 448, 508, 634
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	4 cut(s)	179, 251, 452, 724
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	3 cut(s)	178, 645, 723
Hpy188III	TCNNGA	7 cut(s)	64, 98, 389, 429, 445, 716, 728
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	2 cut(s)	587, 590
HpyAV	CCTTC	2 cut(s)	187, 475
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	186, 245, 266
HpyF3I	CTNAG	2 cut(s)	96, 542
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	190, 448, 508, 634
Kzo9I	GATC	5 cut(s)	42, 102, 376, 633, 718
LmnI	GCTCC	2 cut(s)	391, 431
Lsp1109I	GCAGC	4 cut(s)	406, 409, 580, 591
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	55, 755
MalI	GATC	5 cut(s)	44, 104, 378, 635, 720
MboI	GATC	5 cut(s)	42, 102, 376, 633, 718
MboII	GAAGA	7 cut(s)	37, 84, 100, 133, 362, 695, 698
MflI	RGATCY	3 cut(s)	102, 376, 718
MluCI	AATT	3 cut(s)	20, 158, 742
MlyI	GAGTC	3 cut(s)	245, 461, 718
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	3 cut(s)	261, 300, 414
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	238, 571
MspCI	CTTAAG	2 cut(s)	299, 413
NdeII	GATC	5 cut(s)	42, 102, 376, 633, 718
NlaIII	CATG	4 cut(s)	190, 448, 508, 634
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	2 cut(s)	148, 253
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	508
PaeI	GCATGC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	5 cut(s)	396, 399, 570, 581, 763
PleI	GAGTC	3 cut(s)	245, 460, 718
PpsI	GAGTC	3 cut(s)	245, 460, 718
PspN4I	GGNNCC	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	102, 376, 718
PvuII	CAGCTG	2 cut(s)	238, 571
RsaI	GTAC	4 cut(s)	170, 198, 594, 677
RsaNI	GTAC	4 cut(s)	169, 197, 593, 676
RseI	CAYNNNNRTG	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	261, 300, 414
SatI	GCNGC	5 cut(s)	395, 398, 569, 580, 762
Sau3AI	GATC	5 cut(s)	42, 102, 376, 633, 718
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	3 cut(s)	245, 461, 718
SfaNI	GCATC	1 cut(s)	109
SgrDI	CGTCGACG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	299, 371, 401, 413
SmoI	CTYRAG	4 cut(s)	299, 371, 401, 413
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	3 cut(s)	20, 158, 742
SsiI	CCGC	2 cut(s)	577, 762
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	748
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	65, 165, 585
TasI	AATT	3 cut(s)	20, 158, 742
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	261, 300, 414
Tru9I	TTAA	3 cut(s)	261, 300, 414
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	394, 397, 568, 579
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	388
Vha464I	CTTAAG	2 cut(s)	299, 413
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.