Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Forward (+)

4723613 .. 4730806

Gene Structure 7194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06540.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAAGAGGTAAGGTTCAGCTGAAGCGAATCGAGAACACGATAAGCAGGCAAGTGACATTCTCAAAGAGGAGGACCGGATTGCTCAAAAAAGCTCATGAGATCTCGGTTCTGTGTGATGCTGATGTGGCACTTATTGTCTTCTCCACCAAAGGGAAGCTCTTTGAGTATTCTACTGATTCCAGCATGGAGAGGATTCTGGATCGATACGAACAATATACCTTTGCAGAACGGCAACTAAACGGAACTAATTCTGAATCACAGGAAAACTGGTCTGTGGAATACCCCAAACTTGCGGCAAGGATTGAAGTCATACAAAGGAAGCTGAGGAATTTTACGGGAGAAGATTTAGAACCCTTAAGCTTGAGAGAGCTTCAAAATTTGGAGCAACAGCTTGATACAGCTCTTAAGCGCATACGAACAAGAAAGAACCAACTCATGCATGAATCCATTTCAGAGATGCACAAGAAGCAAAAGGCACTACGGGAACTAAACAACTCGCTAGCAAAGCAGGTGAAGGAGAATGGAAAGATGGTTGAGGAAGAGCATGATCAGGTGCAGGTAGTAGGGCGGCAGCAGCAAACTAACCAAGGCCGCCACAACTCATCCACCCTCATGTTAATGCCGCCACCCCAACCCCCATCAACACCATCACTACCTACTTCTCGAAGCACCAGTGGGGGATTCCAGGCAAGAGGAGCAACGGATGACGGTGATTACGAGGGAAGACCTCGGCCGCCTGCTGCTAAAAACACACACATGCCACTGTGGATGCTTCGCCATTTGGATGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

266

Amino Acids

30.42

Weight (kDa)

9.46

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	2 cut(s)	502, 550
AciI	CCGC	5 cut(s)	296, 571, 595, 626, 737
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	734
AcsI	RAATTY	2 cut(s)	331, 379
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	2 cut(s)	358, 407
AgsI	TTSAA	2 cut(s)	308, 377
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	8 cut(s)	22, 95, 160, 325, 363, 373, 394, 404
AluI	AGCT	8 cut(s)	22, 95, 160, 325, 363, 373, 394, 404
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	592, 734
ApeKI	GCWGC	3 cut(s)	574, 577, 743
ApoI	RAATTY	2 cut(s)	331, 379
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	526, 725
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	133, 733
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	586, 589, 730
BccI	CCATC	3 cut(s)	526, 649, 658
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	689
BclI	TGATCA	1 cut(s)	550
BfaI	CTAG	1 cut(s)	503
BfrI	CTTAAG	2 cut(s)	358, 407
BfuAI	ACCTGC	2 cut(s)	502, 550
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	8 cut(s)	297, 572, 575, 578, 595, 626, 737, 744
BlsI	GCNGC	8 cut(s)	298, 573, 576, 579, 596, 627, 738, 745
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	3 cut(s)	109, 450, 762
BmtI	GCTAGC	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	133, 733
Bpu10I	CCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	589, 731
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	275, 675
BseBI	CCWGG	1 cut(s)	689
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	589, 731
BseGI	GGATG	4 cut(s)	605, 712, 777, 793
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	275, 675
BseRI	GAGGAG	2 cut(s)	85, 711
BseX3I	CGGCCG	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	586, 589, 730
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	737
BshFI	GGCC	2 cut(s)	594, 736
BshVI	ATCGAT	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	153
BsnI	GGCC	2 cut(s)	594, 736
Bsp143I	GATC	3 cut(s)	102, 202, 550
BspACI	CCGC	5 cut(s)	296, 571, 595, 626, 737
BspANI	GGCC	2 cut(s)	594, 736
BspCNI	CTCAG	1 cut(s)	318
BspDI	ATCGAT	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	97
BspMI	ACCTGC	2 cut(s)	502, 550
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	537
BspTI	CTTAAG	2 cut(s)	358, 407
BsrI	ACTGG	2 cut(s)	275, 675
BssECI	CCNNGG	2 cut(s)	589, 731
BssMI	GATC	3 cut(s)	102, 202, 550
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	2 cut(s)	713, 768
Bst6I	CTCTTC	1 cut(s)	537
BstAFI	CTTAAG	2 cut(s)	358, 407
BstC8I	GCNNGC	3 cut(s)	50, 504, 741
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	4 cut(s)	605, 712, 777, 793
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	105, 205, 553
BstMBI	GATC	3 cut(s)	102, 202, 550
BstMCI	CGRYCG	1 cut(s)	737
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 469, 508, 577, 698
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	586, 589, 730
BstV2I	GAAGAC	2 cut(s)	133, 733
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	734
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	594, 736
BsuTUI	ATCGAT	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	605, 712, 777, 793
BtsIMutI	CAGTG	2 cut(s)	682, 764
BveI	ACCTGC	2 cut(s)	502, 550
Cac8I	GCNNGC	3 cut(s)	50, 504, 741
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	205
CviAII	CATG	7 cut(s)	98, 187, 439, 443, 548, 616, 760
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	3 cut(s)	104, 204, 552
DpnII	GATC	3 cut(s)	102, 202, 550
EaeI	YGGCCR	1 cut(s)	734
EagI	CGGCCG	1 cut(s)	734
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EclXI	CGGCCG	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	7 cut(s)	101, 190, 442, 446, 551, 619, 763
FatI	CATG	7 cut(s)	97, 186, 438, 442, 547, 615, 759
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	8 cut(s)	297, 572, 575, 578, 595, 626, 737, 744
FokI	GGATG	3 cut(s)	592, 719, 784
Fsp4HI	GCNGC	8 cut(s)	297, 572, 575, 578, 595, 626, 737, 744
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	8 cut(s)	297, 572, 575, 578, 595, 626, 737, 744
HaeIII	GGCC	2 cut(s)	594, 736
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	7 cut(s)	101, 190, 442, 446, 551, 619, 763
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	6 cut(s)	30, 179, 196, 257, 446, 684
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	526, 725
Hpy188I	TCNGA	2 cut(s)	256, 457
Hpy188III	TCNNGA	4 cut(s)	34, 98, 200, 666
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	713, 768
HpyCH4V	TGCA	4 cut(s)	227, 442, 463, 559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 469, 508, 577, 698
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	7 cut(s)	101, 190, 442, 446, 551, 619, 763
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	102, 202, 550
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	385, 698
Lsp1109I	GCAGC	3 cut(s)	586, 589, 730
LweI	GCATC	3 cut(s)	109, 450, 762
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	104, 204, 552
MboI	GATC	3 cut(s)	102, 202, 550
MboII	GAAGA	5 cut(s)	18, 133, 356, 554, 738
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	250, 331, 379
MnlI	CCTC	9 cut(s)	63, 66, 186, 321, 532, 623, 689, 715, 741
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	3 cut(s)	359, 408, 620
MslI	CAYNNNNRTG	4 cut(s)	614, 620, 758, 786
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	2 cut(s)	358, 407
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	5 cut(s)	128, 469, 508, 577, 698
NdeII	GATC	3 cut(s)	102, 202, 550
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	7 cut(s)	101, 190, 442, 446, 551, 619, 763
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	763
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	6 cut(s)	30, 179, 196, 257, 446, 684
PkrI	GCNGC	8 cut(s)	298, 573, 576, 579, 596, 627, 738, 745
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	22
RseI	CAYNNNNRTG	4 cut(s)	614, 620, 758, 786
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	359, 408, 620
SatI	GCNGC	8 cut(s)	297, 572, 575, 578, 595, 626, 737, 744
Sau3AI	GATC	3 cut(s)	102, 202, 550
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	689
SfaNI	GCATC	3 cut(s)	109, 450, 762
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	4 cut(s)	614, 620, 758, 786
SmlI	CTYRAG	3 cut(s)	358, 364, 407
SmoI	CTYRAG	3 cut(s)	358, 364, 407
Sse9I	AATT	3 cut(s)	250, 331, 379
SsiI	CCGC	5 cut(s)	296, 571, 595, 626, 737
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	713, 768
TaqI	TCGA	3 cut(s)	33, 205, 667
TasI	AATT	3 cut(s)	250, 331, 379
TauI	GCSGC	5 cut(s)	299, 574, 597, 628, 739
TfiI	GAWTC	6 cut(s)	30, 179, 196, 257, 446, 684
Tru1I	TTAA	3 cut(s)	359, 408, 620
Tru9I	TTAA	3 cut(s)	359, 408, 620
TscAI	CASTG	2 cut(s)	682, 771
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	574, 577, 743
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	2 cut(s)	258, 719
TspRI	CASTG	2 cut(s)	682, 771
Vha464I	CTTAAG	2 cut(s)	358, 407
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	2 cut(s)	331, 379
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.