Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

23946546 .. 23951714

Gene Structure 5169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G249300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAAGGGGTAAGGTTCAGCTGAAGCGGATCGAGAACAAGATAAGCAGGCAAGTAACATTCTCGAAGAGAAGGGCCGGATTGCTCAAGAAAGCTCATGAGATCTCAGTTCTATGCGATGCTGACGTGGCACTTATTGTCTTCTCCACCAAAGGGAAGCTCTTTGAGTATTCTAGTGATTCCAGCATGGAGAGCATCCTGGAGCGATATGACCAGTATTCGTATGCAGAACAGCAACTCACAACTGATTCCGAACCACAGGGAAGCTGCTGGTCTCTGGAATATCCCAAGCTTGCAGCAAGGATTGAAGTCTTGCAAAGGAAACTAAGGCATTTTACTGGAGAAGATTTAGAATCCTTAAGCTTGAGAGAGCTTCAAAATTTGGAGCTACAGCTTGAGACAGCACTTAAGCGCATACGAACAAGAAAGAACCAACTGATGCACGAATCCATTTCAGAGCTGCACAAAAAGCAAAAGGCACTGCAGGAGCAAAACAACTCGCTAGCAAAGAAGCTGAAGCTGAAGGAGAATGAAAATATGCTGGAGGTAGAGCATGATGGTCAGGGGCGGCAGGTAGAGCAGCACCAAAGTAACCAAGCCGCCCACAACTCATCCACCCTCCTGCTAATGCCGCCGCCGCCGCCCCAACCCCCGTCAACACCGGCACTACTTGCTTCTCTAACCATTGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGATGATACAGTTGACGAATATTTGGGTTACATGCAAAAAAAAAGCAAGTATATTGAGACTGTATGCAAATATTGATGCAGTGGGGGAATCCAGGCAAGAGGAGGGATGGAAGATGGTGATGATAATGACGGAAGAACTCAAACTCGGCCGCCCACTACTACTAACACACTCATGCCAATGTGGATGTATCGCCATTTCAACGAATAATGGGCTTGCTGGCCGGCCGGCTATTCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

322

Amino Acids

36.22

Weight (kDa)

9.12

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AciI	CCGC	8 cut(s)	28, 568, 600, 632, 635, 638, 641, 874
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	3 cut(s)	871, 943, 947
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	3 cut(s)	44, 536, 542
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	2 cut(s)	358, 407
AgsI	TTSAA	3 cut(s)	308, 377, 924
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	198, 815
Alw26I	GTCTC	3 cut(s)	279, 392, 775
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	4 cut(s)	75, 871, 943, 947
ApeKI	GCWGC	4 cut(s)	267, 296, 460, 580
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	853
AsuNHI	GCTAGC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	254, 308, 447, 592
BccI	CCATC	3 cut(s)	551, 825, 832
BciT130I	CCWGG	2 cut(s)	200, 817
BcoDI	GTCTC	3 cut(s)	279, 392, 775
BfaI	CTAG	2 cut(s)	174, 503
BfmI	CTRYAG	2 cut(s)	389, 482
BfrI	CTTAAG	2 cut(s)	358, 407
BfuAI	ACCTGC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	200, 817
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	200, 817
BmsI	GCATC	4 cut(s)	109, 204, 429, 790
BmtI	GCTAGC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	3 cut(s)	221, 360, 563
BpuEI	CTTGAG	3 cut(s)	71, 385, 416
BsaI	GGTCTC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	3 cut(s)	661, 945, 949
Bse1I	ACTGG	2 cut(s)	214, 343
BseBI	CCWGG	2 cut(s)	200, 817
BseGI	GGATG	4 cut(s)	195, 611, 836, 914
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	214, 343
BseRI	GAGGAG	1 cut(s)	839
BseX3I	CGGCCG	2 cut(s)	871, 947
BseXI	GCAGC	4 cut(s)	254, 308, 447, 592
BsgI	GTGCAG	1 cut(s)	446
Bsh1285I	CGRYCG	2 cut(s)	874, 950
BshFI	GGCC	4 cut(s)	77, 873, 945, 949
BsiEI	CGRYCG	2 cut(s)	874, 950
BsiSI	CCGG	4 cut(s)	78, 662, 946, 950
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	3 cut(s)	279, 392, 775
BsnI	GGCC	4 cut(s)	77, 873, 945, 949
Bso31I	GGTCTC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	30, 102
BspACI	CCGC	8 cut(s)	28, 568, 600, 632, 635, 638, 641, 874
BspANI	GGCC	4 cut(s)	77, 873, 945, 949
BspCNI	CTCAG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	38
BspTI	CTTAAG	2 cut(s)	358, 407
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	3 cut(s)	661, 945, 949
BsrI	ACTGG	2 cut(s)	214, 343
BssAI	RCCGGY	3 cut(s)	661, 945, 949
BssMI	GATC	2 cut(s)	30, 102
Bst2UI	CCWGG	2 cut(s)	200, 817
Bst4CI	ACNGT	2 cut(s)	735, 786
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	2 cut(s)	358, 407
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	7 cut(s)	50, 294, 504, 939, 943, 947, 951
BstDEI	CTNAG	2 cut(s)	106, 326
BstF5I	GGATG	4 cut(s)	195, 611, 836, 914
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	2 cut(s)	33, 105
BstMAI	GTCTC	3 cut(s)	279, 392, 775
BstMBI	GATC	2 cut(s)	30, 102
BstMCI	CGRYCG	2 cut(s)	874, 950
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 192, 469, 577, 631, 637, 640, 671
BstNI	CCWGG	2 cut(s)	200, 817
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	2 cut(s)	198, 815
BstSFI	CTRYAG	2 cut(s)	389, 482
BstV1I	GCAGC	4 cut(s)	254, 308, 447, 592
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BstZI	CGGCCG	2 cut(s)	871, 947
BsuRI	GGCC	4 cut(s)	77, 873, 945, 949
BtgZI	GCGATG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	4 cut(s)	195, 611, 836, 914
BtsI	GCAGTG	2 cut(s)	479, 810
BtsIMutI	CAGTG	2 cut(s)	479, 810
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	7 cut(s)	50, 294, 504, 939, 943, 947, 951
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	3 cut(s)	661, 945, 949
Cfr13I	GGNCC	1 cut(s)	75
CviAII	CATG	5 cut(s)	98, 187, 554, 756, 897
DdeI	CTNAG	2 cut(s)	106, 326
DpnI	GATC	2 cut(s)	32, 104
DpnII	GATC	2 cut(s)	30, 102
EaeI	YGGCCR	3 cut(s)	871, 943, 947
EagI	CGGCCG	2 cut(s)	871, 947
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EclXI	CGGCCG	2 cut(s)	871, 947
Eco31I	GGTCTC	1 cut(s)	279
Eco52I	CGGCCG	2 cut(s)	871, 947
Eco57I	CTGAAG	3 cut(s)	44, 536, 542
EcoRII	CCWGG	2 cut(s)	198, 815
FaeI	CATG	5 cut(s)	101, 190, 557, 759, 900
FatI	CATG	5 cut(s)	97, 186, 553, 755, 896
FokI	GGATG	4 cut(s)	182, 598, 843, 921
FseI	GGCCGGCC	1 cut(s)	949
FspBI	CTAG	2 cut(s)	174, 503
GlaI	GCGC	1 cut(s)	413
GsuI	CTGGAG	3 cut(s)	221, 360, 563
HaeIII	GGCC	4 cut(s)	77, 873, 945, 949
HapII	CCGG	4 cut(s)	78, 662, 946, 950
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	5 cut(s)	101, 190, 557, 759, 900
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	2 cut(s)	657, 738
HindII	GTYRAC	2 cut(s)	657, 738
HindIII	AAGCTT	2 cut(s)	290, 361
HinfI	GANTC	5 cut(s)	179, 248, 353, 446, 812
HpaII	CCGG	4 cut(s)	78, 662, 946, 950
HphI	GGTGA	1 cut(s)	853
Hpy166II	GTNNAC	2 cut(s)	657, 738
Hpy188I	TCNGA	2 cut(s)	253, 457
Hpy188III	TCNNGA	6 cut(s)	34, 64, 88, 98, 278, 724
Hpy8I	GTNNAC	2 cut(s)	657, 738
HpyAV	CCTTC	2 cut(s)	66, 517
HpyCH4III	ACNGT	2 cut(s)	735, 786
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	9 cut(s)	227, 296, 316, 442, 463, 484, 759, 791, 803
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 192, 469, 577, 631, 637, 640, 671
HpyF3I	CTNAG	2 cut(s)	106, 326
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	101, 190, 557, 759, 900
HspAI	GCGC	1 cut(s)	412
KroI	GCCGGC	2 cut(s)	945, 949
KroNI	GCCGGC	2 cut(s)	947, 951
Kzo9I	GATC	2 cut(s)	30, 102
LmnI	GCTCC	3 cut(s)	202, 385, 487
Lsp1109I	GCAGC	4 cut(s)	254, 308, 447, 592
LweI	GCATC	4 cut(s)	109, 204, 429, 790
MaeI	CTAG	2 cut(s)	174, 503
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	55, 590, 751
MalI	GATC	2 cut(s)	32, 104
MboI	GATC	2 cut(s)	30, 102
MboII	GAAGA	5 cut(s)	79, 133, 356, 847, 869
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	1 cut(s)	379
MnlI	CCTC	4 cut(s)	538, 629, 817, 820
MroNI	GCCGGC	2 cut(s)	945, 949
MseI	TTAA	2 cut(s)	359, 408
MslI	CAYNNNNRTG	2 cut(s)	895, 901
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	2 cut(s)	358, 407
MspI	CCGG	4 cut(s)	78, 662, 946, 950
MspR9I	CCNGG	2 cut(s)	200, 817
MvaI	CCWGG	2 cut(s)	200, 817
MwoI	GCNNNNNNNGC	8 cut(s)	128, 192, 469, 577, 631, 637, 640, 671
NaeI	GCCGGC	2 cut(s)	947, 951
NdeII	GATC	2 cut(s)	30, 102
NgoMIV	GCCGGC	2 cut(s)	945, 949
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	5 cut(s)	101, 190, 557, 759, 900
NmeAIII	GCCGAG	1 cut(s)	849
NspI	RCATGY	1 cut(s)	759
PagI	TCATGA	1 cut(s)	97
PdiI	GCCGGC	2 cut(s)	947, 951
PfeI	GAWTC	5 cut(s)	179, 248, 353, 446, 812
PfoI	TCCNGGA	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	198, 815
PspGI	CCWGG	2 cut(s)	198, 815
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	22
RigI	GGCCGGCC	1 cut(s)	949
RseI	CAYNNNNRTG	2 cut(s)	895, 901
SaqAI	TTAA	2 cut(s)	359, 408
Sau3AI	GATC	2 cut(s)	30, 102
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	200, 817
SfaNI	GCATC	4 cut(s)	109, 204, 429, 790
SfcI	CTRYAG	2 cut(s)	389, 482
SmiMI	CAYNNNNRTG	2 cut(s)	895, 901
SmlI	CTYRAG	5 cut(s)	86, 358, 364, 395, 407
SmoI	CTYRAG	5 cut(s)	86, 358, 364, 395, 407
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	8 cut(s)	28, 568, 600, 632, 635, 638, 641, 874
SspI	AATATT	2 cut(s)	745, 796
SspMI	CTAG	2 cut(s)	174, 503
StyD4I	CCNGG	2 cut(s)	198, 815
TaaI	ACNGT	2 cut(s)	735, 786
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	33, 65
TasI	AATT	1 cut(s)	379
TauI	GCSGC	7 cut(s)	571, 602, 634, 637, 640, 643, 876
TfiI	GAWTC	5 cut(s)	179, 248, 353, 446, 812
Tru1I	TTAA	2 cut(s)	359, 408
Tru9I	TTAA	2 cut(s)	359, 408
TscAI	CASTG	2 cut(s)	486, 810
TseI	GCWGC	4 cut(s)	267, 296, 460, 580
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	2 cut(s)	486, 810
Vha464I	CTTAAG	2 cut(s)	358, 407
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	759
XspI	CTAG	2 cut(s)	174, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.