Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

25982294 .. 25986349

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGAAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCTATGAGAGGTACTCTTACGCCGAAAGACAGCTTATTGCACCTGAGTCCGACGTCAATACAAACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGAGGCATTATCTTGGGGAAGACTTGCAAGCAATGAGCCCTAAAGAGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAGTCCATCAATGAGCTCCAAAAAAAGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAGGAGCAGTGGGATCAGCAGAACCAAGGCCACAATATGCCTCCCCCTCTGCCACCGCAGCAGCACCAAATCCAGCATCCTTACATGCTCTCTCATCAGCCATCTCCTTTTCTCAACATGGGTGGTCTGTATCAAGAAGATGATCCTATGGCAATGAGGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGCAACCTTGGCTGCTTCGCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0009933 GO:0010022 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

30.18

Weight (kDa)

8.55

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 172	1.8e-30	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AciI	CCGC	3 cut(s)	418, 602, 765
AclWI	GGATC	2 cut(s)	567, 683
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	2 cut(s)	144, 359
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	218, 443
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflII	CTTAAG	2 cut(s)	293, 407
AgsI	TTSAA	5 cut(s)	20, 25, 88, 203, 731
AluBI	AGCT	7 cut(s)	77, 95, 238, 310, 373, 394, 460
AluI	AGCT	7 cut(s)	77, 95, 238, 310, 373, 394, 460
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	567, 683
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	477, 574
ApeKI	GCWGC	5 cut(s)	388, 391, 604, 607, 756
ApoI	RAATTY	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	531
AsuII	TTCGAA	1 cut(s)	165
BanII	GRGCYC	3 cut(s)	365, 462, 544
BbsI	GAAGAC	2 cut(s)	133, 351
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	5 cut(s)	400, 403, 616, 619, 743
BccI	CCATC	3 cut(s)	271, 458, 655
BfaI	CTAG	1 cut(s)	423
BfrI	CTTAAG	2 cut(s)	293, 407
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	6 cut(s)	389, 392, 605, 608, 757, 765
BlsI	GCNGC	6 cut(s)	390, 393, 606, 609, 758, 766
BmsI	GCATC	2 cut(s)	109, 631
BpiI	GAAGAC	2 cut(s)	133, 351
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	571, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	363, 705
BseDI	CCNNGG	2 cut(s)	571, 751
BseGI	GGATG	2 cut(s)	414, 622
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	2 cut(s)	363, 705
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	5 cut(s)	400, 403, 616, 619, 743
BshFI	GGCC	2 cut(s)	479, 576
BsiHKAI	GWGCWC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	469
BsnI	GGCC	2 cut(s)	479, 576
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	365, 462, 544
Bsp143I	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
BspACI	CCGC	3 cut(s)	418, 602, 765
BspANI	GGCC	2 cut(s)	479, 576
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	97
BspPI	GGATC	2 cut(s)	567, 683
BspQI	GCTCTTC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	165
BspTI	CTTAAG	2 cut(s)	293, 407
BsrDI	GCAATG	2 cut(s)	363, 705
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	571, 751
BssMI	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	571, 751
Bst6I	CTCTTC	3 cut(s)	20, 67, 167
BstACI	GRCGYC	1 cut(s)	258
BstAFI	CTTAAG	2 cut(s)	293, 407
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	354, 500
BstDEI	CTNAG	3 cut(s)	249, 300, 536
BstF5I	GGATG	2 cut(s)	414, 622
BstKTI	GATC	6 cut(s)	45, 105, 516, 562, 691, 715
BstMBI	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 604, 753
BstNSI	RCATGY	2 cut(s)	502, 634
BstV1I	GCAGC	5 cut(s)	400, 403, 616, 619, 743
BstV2I	GAAGAC	2 cut(s)	133, 351
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	479, 576
BtsCI	GGATG	2 cut(s)	414, 622
BtsI	GCAGTG	2 cut(s)	399, 560
BtsIMutI	CAGTG	3 cut(s)	174, 399, 560
Cac8I	GCNNGC	2 cut(s)	354, 500
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	217, 442
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	5 cut(s)	98, 499, 631, 664, 768
CviQI	GTAC	2 cut(s)	217, 442
DdeI	CTNAG	3 cut(s)	249, 300, 536
DpnI	GATC	6 cut(s)	44, 104, 515, 561, 690, 714
DpnII	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
Eam1104I	CTCTTC	3 cut(s)	20, 67, 167
EarI	CTCTTC	3 cut(s)	20, 67, 167
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	571, 751
Eco24I	GRGCYC	3 cut(s)	365, 462, 544
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	144, 359
EcoICRI	GAGCTC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	571, 751
EcoT38I	GRGCYC	3 cut(s)	365, 462, 544
ErhI	CCWWGG	2 cut(s)	571, 751
FaeI	CATG	5 cut(s)	101, 502, 634, 667, 771
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	5 cut(s)	97, 498, 630, 663, 767
Fnu4HI	GCNGC	6 cut(s)	389, 392, 605, 608, 757, 765
FokI	GGATG	2 cut(s)	401, 609
FriOI	GRGCYC	3 cut(s)	365, 462, 544
Fsp4HI	GCNGC	6 cut(s)	389, 392, 605, 608, 757, 765
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	6 cut(s)	389, 392, 605, 608, 757, 765
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	479, 576
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	101, 502, 634, 667, 771
HinfI	GANTC	5 cut(s)	179, 251, 379, 446, 724
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	2 cut(s)	256, 378
Hpy188III	TCNNGA	6 cut(s)	64, 98, 383, 680, 716, 728
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	245, 352, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 604, 753
HpyF3I	CTNAG	3 cut(s)	249, 300, 536
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	101, 502, 634, 667, 771
Kzo9I	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	4 cut(s)	385, 465, 487, 550
LpnPI	CCDG	9 cut(s)	63, 256, 261, 274, 338, 368, 470, 533, 632
Lsp1109I	GCAGC	5 cut(s)	400, 403, 616, 619, 743
LweI	GCATC	2 cut(s)	109, 631
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	44, 104, 515, 561, 690, 714
MboI	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
MboII	GAAGA	8 cut(s)	37, 84, 100, 133, 154, 205, 356, 695
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	365, 462, 544
MluCI	AATT	2 cut(s)	20, 531
MlyI	GAGTC	3 cut(s)	260, 455, 718
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	8 cut(s)	21, 207, 321, 516, 597, 603, 696, 699
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	2 cut(s)	294, 408
MspCI	CTTAAG	2 cut(s)	293, 407
MunI	CAATTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	128, 604, 753
NdeII	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
NlaIII	CATG	5 cut(s)	101, 502, 634, 667, 771
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	502, 634
NspV	TTCGAA	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	179, 379
PkrI	GCNGC	6 cut(s)	390, 393, 606, 609, 758, 766
PleI	GAGTC	3 cut(s)	259, 454, 718
PpsI	GAGTC	3 cut(s)	259, 454, 718
Psp124BI	GAGCTC	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	218, 443
RsaNI	GTAC	2 cut(s)	217, 442
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	294, 408
SatI	GCNGC	6 cut(s)	389, 392, 605, 608, 757, 765
Sau3AI	GATC	6 cut(s)	42, 102, 513, 559, 688, 712
SchI	GAGTC	3 cut(s)	260, 455, 718
SduI	GDGCHC	3 cut(s)	365, 462, 544
SfaNI	GCATC	2 cut(s)	109, 631
SfuI	TTCGAA	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	293, 407
SmoI	CTYRAG	2 cut(s)	293, 407
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	2 cut(s)	20, 531
SsiI	CCGC	3 cut(s)	418, 602, 765
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	462
StyI	CCWWGG	2 cut(s)	571, 751
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	65, 165, 275, 717
TasI	AATT	2 cut(s)	20, 531
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	2 cut(s)	179, 379
Tru1I	TTAA	2 cut(s)	294, 408
Tru9I	TTAA	2 cut(s)	294, 408
TscAI	CASTG	3 cut(s)	181, 406, 560
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	388, 391, 604, 607, 756
Tsp45I	GTSAC	1 cut(s)	55
TspRI	CASTG	3 cut(s)	181, 406, 560
Vha464I	CTTAAG	2 cut(s)	293, 407
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	2 cut(s)	502, 634
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	423
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.