Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

59521342 .. 59524755

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACCTTTTCGAAACGAAGAACTGGGTTGCTGAAGAAGGCGCATGAGATCTCTGTCTTGTGCGATGCTCAGGTTGCTTTGATTGTCTTCTCTAACAAAGGGAAGCTCTTTGAATACGCAACTGATTCATGCATGGAGAATATACTTGAACGCCATGAGCGGTACTCGTACGCAGAGAGACAGCTAGTCGAACCTGATTTGGAATCACAGGGTAACTGGACCTTCGAACAAGCCAGACTGAAGGTGAAAGTTGAGCTTCTGCAAAGAAACCTTAGGCACTATTTGGGAGAAGATCTGGATTCATTGAGTATCAAAGAGATCCAAAGTTTGGAGCAACAGCTTGACAATTCTCTTAAGCAAATTCGATCAAGGAAGAACCAACTCATGCATGAGTCTATCTCCGAGCTTCAGAGAAAGGAGAAGGCAATGCAGGAGCAAAATAACTTGCTTTCAAAGAAGATTAAGGAGAAAGAGAAGAATGTAGCGGCGGAAGCTCAGGAGGTTCATAATTGGGAGCAGCAGCAACAGCAGCAAAACCATGGCCTTAACCTGCTAGCACAGGCTCCACTTCCATGTTTGAACATGGGGGGCACTCAGCAAAATGATCAGTTCCTTCAAGTGAGGAGGAACCAGCTCGACCTTACTCTCGAGCCATCGTTGTATTCATGCCACCTTGGATGCTTTGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

248

Amino Acids

28.9

Weight (kDa)

8.74

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 172	1.9e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	43, 612
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	3 cut(s)	214, 539, 542
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	4 cut(s)	44, 107, 314, 446
AfaI	GTAC	2 cut(s)	218, 224
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	5 cut(s)	167, 203, 507, 634, 671
AhdI	GACNNNNNGTC	1 cut(s)	239
AluBI	AGCT	8 cut(s)	22, 160, 238, 310, 394, 460, 548, 688
AluI	AGCT	8 cut(s)	22, 160, 238, 310, 394, 460, 548, 688
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	3 cut(s)	571, 574, 583
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	49, 310
AsuII	TTCGAA	2 cut(s)	65, 279
AsuNHI	GCTAGC	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	583, 586, 595
BccI	CCATC	1 cut(s)	715
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	239, 608
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	2 cut(s)	43, 612
BglII	AGATCT	2 cut(s)	102, 346
BisI	GCNGC	4 cut(s)	540, 572, 575, 584
BlsI	GCNGC	4 cut(s)	541, 573, 576, 585
Bme18I	GGWCC	1 cut(s)	273
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	618, 683
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	109, 722
BmtI	GCTAGC	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 437, 469
Bpu10I	CCTNAGC	2 cut(s)	123, 549
Bpu14I	TTCGAA	2 cut(s)	65, 279
BsaJI	CCNNGG	2 cut(s)	592, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	82, 275
Bse21I	CCTNAGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	592, 727
BseGI	GGATG	1 cut(s)	737
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	137, 563, 662
BseNI	ACTGG	2 cut(s)	82, 275
BseRI	GAGGAG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	3 cut(s)	583, 586, 595
BshFI	GGCC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	701
BsiWI	CGTACG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	701
Bsp119I	TTCGAA	2 cut(s)	65, 279
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	214, 539, 542
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	3 cut(s)	136, 562, 661
BspHI	TCATGA	1 cut(s)	743
BspLI	GGNNCC	2 cut(s)	618, 683
BspMI	ACCTGC	2 cut(s)	43, 612
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	2 cut(s)	65, 279
BspTI	CTTAAG	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	82, 275
BssECI	CCNNGG	2 cut(s)	592, 727
BssMI	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
BssT1I	CCWWGG	2 cut(s)	592, 727
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	407
BstBI	TTCGAA	2 cut(s)	65, 279
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	4 cut(s)	123, 326, 549, 648
BstDSI	CCRYGG	1 cut(s)	592
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	737
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	6 cut(s)	45, 105, 349, 375, 422, 661
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 545, 580, 583
BstPI	GGTNACC	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	647
BstV1I	GCAGC	3 cut(s)	583, 586, 595
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	102, 346, 372
BstYI	RGATCY	3 cut(s)	102, 346, 372
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	737
BveI	ACCTGC	2 cut(s)	43, 612
Cac8I	GCNNGC	1 cut(s)	609
CciI	TCATGA	1 cut(s)	743
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	217, 223
CviQI	GTAC	2 cut(s)	217, 223
DdeI	CTNAG	4 cut(s)	123, 326, 549, 648
DpnI	GATC	6 cut(s)	44, 104, 348, 374, 421, 660
DpnII	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
DriI	GACNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	592, 727
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	4 cut(s)	44, 107, 314, 446
Eco81I	CCTNAGG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	701
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	592, 727
EcoT22I	ATGCAT	2 cut(s)	188, 444
ErhI	CCWWGG	2 cut(s)	592, 727
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	540, 572, 575, 584
Fsp4HI	GCNGC	4 cut(s)	540, 572, 575, 584
FspBI	CTAG	2 cut(s)	239, 608
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	540, 572, 575, 584
HaeIII	GGCC	1 cut(s)	597
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	179, 257, 353, 446
HphI	GGTGA	2 cut(s)	49, 310
Hpy188I	TCNGA	2 cut(s)	457, 465
Hpy188III	TCNNGA	4 cut(s)	350, 551, 701, 744
HpyAV	CCTTC	5 cut(s)	85, 286, 289, 469, 677
HpyCH4V	TGCA	4 cut(s)	186, 316, 442, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 545, 580, 583
HpyF3I	CTNAG	4 cut(s)	123, 326, 549, 648
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
LmnI	GCTCC	4 cut(s)	385, 487, 568, 622
Lsp1109I	GCAGC	3 cut(s)	583, 586, 595
LweI	GCATC	2 cut(s)	109, 722
MaeI	CTAG	2 cut(s)	239, 608
MaeIII	GTNAC	2 cut(s)	55, 266
MalI	GATC	6 cut(s)	44, 104, 348, 374, 421, 660
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
MboII	GAAGA	8 cut(s)	37, 84, 100, 133, 356, 439, 523, 541
MflI	RGATCY	3 cut(s)	102, 346, 372
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	3 cut(s)	400, 414, 562
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	21, 547, 669, 672
Mph1103I	ATGCAT	2 cut(s)	188, 444
MseI	TTAA	3 cut(s)	408, 516, 600
MslI	CAYNNNNRTG	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	1 cut(s)	407
MwoI	GCNNNNNNNGC	4 cut(s)	128, 545, 580, 583
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
NheI	GCTAGC	1 cut(s)	607
NlaIV	GGNNCC	2 cut(s)	618, 683
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	2 cut(s)	188, 444
NspV	TTCGAA	2 cut(s)	65, 279
PaeR7I	CTCGAG	1 cut(s)	701
PagI	TCATGA	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	179, 257, 353
Pfl23II	CGTACG	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	541, 573, 576, 585
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	55
PspLI	CGTACG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	618, 683
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	3 cut(s)	102, 346, 372
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	218, 224
RsaNI	GTAC	2 cut(s)	217, 223
RseI	CAYNNNNRTG	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	408, 516, 600
SatI	GCNGC	4 cut(s)	540, 572, 575, 584
Sau3AI	GATC	6 cut(s)	42, 102, 346, 372, 419, 658
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	2 cut(s)	109, 722
Sfr274I	CTCGAG	1 cut(s)	701
SfuI	TTCGAA	2 cut(s)	65, 279
SinI	GGWCC	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	625
SmlI	CTYRAG	2 cut(s)	407, 701
SmoI	CTYRAG	2 cut(s)	407, 701
Sse9I	AATT	3 cut(s)	400, 414, 562
SsiI	CCGC	3 cut(s)	214, 539, 542
SspMI	CTAG	2 cut(s)	239, 608
StyI	CCWWGG	2 cut(s)	592, 727
TaqI	TCGA	6 cut(s)	65, 243, 279, 418, 690, 702
TasI	AATT	3 cut(s)	400, 414, 562
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	3 cut(s)	179, 257, 353
Tru1I	TTAA	3 cut(s)	408, 516, 600
Tru9I	TTAA	3 cut(s)	408, 516, 600
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	571, 574, 583
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	171, 345, 548, 708, 732
Van91I	CCANNNNNTGG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	701
XspI	CTAG	2 cut(s)	239, 608
Zsp2I	ATGCAT	2 cut(s)	188, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.