Rorug04G0304200

Floral homeotic protein APETALA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002429
Physical Location & Seq
Reverse (-)
47950668 .. 47951267
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0304200.1

Sequence Viewer

Length: 333 bp
ATGGATTTTGGGGACGACGACGACTGGAATTTCAGCGCGGAAGAGCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAACTCTCTCAGCAACGCATCAACTCCGCTTCCACTTGTTCTTGTTCTTCTTCCTTTTCATTCAATCACCACCACCACCCACACCAGTCGTCTTTACCCACCACCACCACCACCAGCAATGCCTTCGAAAGCTTCATTCCGATTTCTCTTCCTAACCAGGTGCCGCCGCCGCCACCTTTGTCTCCTGGAGCCAGAGTATTACCTTCTTCTCTGGATGTTAAAGTAAACCCTGGTCAGTGCCTTAACTCCCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

5.03

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 38, 102, 239, 242, 245
AcsI RAATTY 1 cut(s) 28
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 231, 259, 304
AluBI AGCT 2 cut(s) 46, 207
AluI AGCT 2 cut(s) 46, 207
Alw26I GTCTC 2 cut(s) 57, 261
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 3 cut(s) 233, 261, 306
BcoDI GTCTC 2 cut(s) 57, 261
BisI GCNGC 3 cut(s) 239, 242, 245
BlsI GCNGC 3 cut(s) 240, 243, 246
Bme1390I CCNGG 3 cut(s) 233, 261, 306
BmiI GGNNCC 2 cut(s) 237, 265
BmrFI CCNGG 3 cut(s) 233, 261, 306
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 2 cut(s) 29, 160
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 3 cut(s) 233, 261, 306
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 29, 160
Bsh1236I CGCG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 57, 261
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 201
BspACI CCGC 5 cut(s) 38, 102, 239, 242, 245
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 237, 265
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 2 cut(s) 29, 160
BssECI CCNNGG 1 cut(s) 304
Bst2UI CCWGG 3 cut(s) 233, 261, 306
Bst6I CTCTTC 2 cut(s) 36, 228
BstBI TTCGAA 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 38
BstMAI GTCTC 2 cut(s) 57, 261
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 3 cut(s) 233, 261, 306
BstSCI CCNGG 3 cut(s) 231, 259, 304
BstUI CGCG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 38
CseI GACGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 231
CviJI RGCY 3 cut(s) 46, 207, 266
CviKI_1 RGCY 3 cut(s) 46, 207, 266
DdeI CTNAG 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 36, 228
EarI CTCTTC 2 cut(s) 36, 228
EcoRII CCWGG 3 cut(s) 231, 259, 304
Esp3I CGTCTC 1 cut(s) 57
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 1 cut(s) 26
Fnu4HI GCNGC 3 cut(s) 239, 242, 245
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 3 cut(s) 239, 242, 245
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 239, 242, 245
GsuI CTGGAG 1 cut(s) 282
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 73, 287, 330
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 2 cut(s) 208, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 84
HspAI GCGC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 263
LweI GCATC 1 cut(s) 102
MabI ACCWGGT 1 cut(s) 231
MboII GAAGA 5 cut(s) 53, 114, 117, 215, 273
MluCI AATT 1 cut(s) 28
MnlI CCTC 1 cut(s) 65
MseI TTAA 2 cut(s) 294, 318
MspR9I CCNGG 3 cut(s) 233, 261, 306
MvaI CCWGG 3 cut(s) 233, 261, 306
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 237, 265
NspV TTCGAA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 3 cut(s) 240, 243, 246
Psp6I CCWGG 3 cut(s) 231, 259, 304
PspGI CCWGG 3 cut(s) 231, 259, 304
PspN4I GGNNCC 2 cut(s) 237, 265
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 294, 318
SatI GCNGC 3 cut(s) 239, 242, 245
ScrFI CCNGG 3 cut(s) 233, 261, 306
SetI ASST 5 cut(s) 48, 209, 237, 253, 280
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 201
Sse9I AATT 1 cut(s) 28
SsiI CCGC 5 cut(s) 38, 102, 239, 242, 245
StyD4I CCNGG 3 cut(s) 231, 259, 304
TaqI TCGA 2 cut(s) 57, 201
TasI AATT 1 cut(s) 28
TauI GCSGC 3 cut(s) 241, 244, 247
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 294, 318
Tru9I TTAA 2 cut(s) 294, 318
TscAI CASTG 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 123, 199
TspRI CASTG 1 cut(s) 317
XapI RAATTY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.