Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

4125254 .. 4129176

Gene Structure 3923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1059200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGGAGAGGTAGAGTTCAGCTGAAGCGCATAGAGAACAAGATCAACAGGCAGGTGACTTTTTCCAAAAGAAGCACTGGGCTGCTGAAGAAGGCTCATGAGATCTCTGTCTTGTGTGATGCTCAGGTTGCTTTGATTGTCTTCTCCAACAAGGGGAAGCTCCTTGAGTACGCCACAGATTCATGTATGGAGCAAATCCTTGAACGCTATGAAAGATACTCTTACGCAGAAAGACAGCTAGTTGAACCAGATTTTGAGTCGCAGGGTAACTGGACCTTTGAATATTCCAGACTAAAGGCTAAAGTTGAGGTTTTGCAAAGAAACCATAGGCACTATTTGGGAGAAGACCTGGATTCCTTGACTCTCAAGGATATCCAAAGTTTGGAGCAACAGCTTGACACCGCTCATAAACAAATTCGATTAAGAAAAAATCAACTCATGCATGAATCCATCACTGAGCTTCAGAGAAAGGAAAAGGCGATACAGGAGCAAAATAACTTGCTAGCAAAGAAGATAAAGGAGAAGGAGAAGGCTGCAGCTCAGCCCCAGGTTCAAAACTGGGAGCAGCAGAACCATGACCTTGACCTGCTTCCACAGCCCCTTCCATGTCTTAACATTGGGGGGACGCAGCAAGATGAATTCCTTCAAGTGAGGAGGAACCAGCTGGACCTTACACTGGAACCATTTTATTCATGCCATCTCGGATGCTTTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

240

Amino Acids

27.95

Weight (kDa)

8.21

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 172	7.2e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 594
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	404
AciI	CCGC	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	414, 638
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	153, 382, 676
AgsI	TTSAA	5 cut(s)	203, 245, 281, 554, 647
AjnI	CCWGG	2 cut(s)	348, 546
AluBI	AGCT	7 cut(s)	22, 160, 238, 394, 460, 539, 664
AluI	AGCT	7 cut(s)	22, 160, 238, 394, 460, 539, 664
ApeKI	GCWGC	6 cut(s)	82, 533, 536, 565, 628, 713
ApoI	RAATTY	2 cut(s)	414, 638
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	273, 667
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	273, 667
BbsI	GAAGAC	2 cut(s)	133, 351
BbvI	GCAGC	6 cut(s)	69, 520, 548, 577, 640, 700
BccI	CCATC	2 cut(s)	458, 705
BciT130I	CCWGG	2 cut(s)	350, 548
BfaI	CTAG	2 cut(s)	239, 503
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	2 cut(s)	43, 594
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	6 cut(s)	83, 534, 537, 566, 629, 714
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	6 cut(s)	84, 535, 538, 567, 630, 715
Bme1390I	CCNGG	2 cut(s)	350, 548
Bme18I	GGWCC	2 cut(s)	273, 667
BmgT120I	GGNCC	2 cut(s)	273, 667
BmiI	GGNNCC	2 cut(s)	659, 681
BmrFI	CCNGG	2 cut(s)	350, 548
BmrI	ACTGGG	2 cut(s)	87, 568
BmsI	GCATC	2 cut(s)	109, 695
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	2 cut(s)	87, 568
BpiI	GAAGAC	2 cut(s)	133, 351
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	185, 350
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 382, 676
Bse1I	ACTGG	4 cut(s)	82, 275, 563, 681
BseBI	CCWGG	2 cut(s)	350, 548
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	710
BseLI	CCNNNNNNNGG	3 cut(s)	153, 382, 676
BseMII	CTCAG	3 cut(s)	137, 447, 554
BseNI	ACTGG	4 cut(s)	82, 275, 563, 681
BseRI	GAGGAG	1 cut(s)	667
BseXI	GCAGC	6 cut(s)	69, 520, 548, 577, 640, 700
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	3 cut(s)	153, 382, 676
BsmFI	GGGAC	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	42, 102
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	402
BspCNI	CTCAG	3 cut(s)	136, 448, 553
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	659, 681
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	2 cut(s)	43, 594
BspOI	GCTAGC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	404
BsrI	ACTGG	4 cut(s)	82, 275, 563, 681
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	42, 102
Bst2UI	CCWGG	2 cut(s)	350, 548
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	3 cut(s)	123, 456, 540
BstF5I	GGATG	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	45, 105
BstMBI	GATC	2 cut(s)	42, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 595
BstNI	CCWGG	2 cut(s)	350, 548
BstSCI	CCNGG	2 cut(s)	348, 546
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	6 cut(s)	69, 520, 548, 577, 640, 700
BstV2I	GAAGAC	2 cut(s)	133, 351
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	710
BtsIMutI	CAGTG	3 cut(s)	75, 453, 674
BveI	ACCTGC	2 cut(s)	43, 594
Cac8I	GCNNGC	1 cut(s)	504
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	273, 667
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	7 cut(s)	98, 183, 439, 443, 575, 606, 693
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	123, 456, 540
DpnI	GATC	2 cut(s)	44, 104
DpnII	GATC	2 cut(s)	42, 102
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	273, 667
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	348, 546
EcoRV	GATATC	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	444
FaeI	CATG	7 cut(s)	101, 186, 442, 446, 578, 609, 696
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	7 cut(s)	97, 182, 438, 442, 574, 605, 692
Fnu4HI	GCNGC	6 cut(s)	83, 534, 537, 566, 629, 714
Fsp4HI	GCNGC	6 cut(s)	83, 534, 537, 566, 629, 714
FspBI	CTAG	2 cut(s)	239, 503
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	6 cut(s)	83, 534, 537, 566, 629, 714
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	7 cut(s)	101, 186, 442, 446, 578, 609, 696
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	5 cut(s)	179, 257, 353, 361, 446
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	465, 704
Hpy188III	TCNNGA	2 cut(s)	98, 288
HpyAV	CCTTC	5 cut(s)	85, 517, 523, 611, 653
HpyCH4V	TGCA	3 cut(s)	316, 442, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 595
HpyF3I	CTNAG	3 cut(s)	123, 456, 540
Hsp92II	CATG	7 cut(s)	101, 186, 442, 446, 578, 609, 696
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	42, 102
LmnI	GCTCC	5 cut(s)	165, 190, 385, 487, 562
Lsp1109I	GCAGC	6 cut(s)	69, 520, 548, 577, 640, 700
LweI	GCATC	2 cut(s)	109, 695
MaeI	CTAG	2 cut(s)	239, 503
MaeIII	GTNAC	2 cut(s)	55, 266
MalI	GATC	2 cut(s)	44, 104
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	2 cut(s)	42, 102
MboII	GAAGA	4 cut(s)	100, 133, 356, 523
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	2 cut(s)	414, 638
MlyI	GAGTC	2 cut(s)	266, 355
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	301, 645, 648
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	2 cut(s)	422, 612
MspA1I	CMGCKG	2 cut(s)	22, 664
MspR9I	CCNGG	2 cut(s)	350, 548
MvaI	CCWGG	2 cut(s)	350, 548
MwoI	GCNNNNNNNGC	2 cut(s)	128, 595
NdeII	GATC	2 cut(s)	42, 102
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	7 cut(s)	101, 186, 442, 446, 578, 609, 696
NlaIV	GGNNCC	2 cut(s)	659, 681
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	444
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	179, 353, 446
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	6 cut(s)	84, 535, 538, 567, 630, 715
PleI	GAGTC	2 cut(s)	265, 355
PpsI	GAGTC	2 cut(s)	265, 355
Psp6I	CCWGG	2 cut(s)	348, 546
PspGI	CCWGG	2 cut(s)	348, 546
PspN4I	GGNNCC	2 cut(s)	659, 681
PspPI	GGNCC	2 cut(s)	273, 667
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	2 cut(s)	22, 664
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	422, 612
SatI	GCNGC	6 cut(s)	83, 534, 537, 566, 629, 714
Sau3AI	GATC	2 cut(s)	42, 102
Sau96I	GGNCC	2 cut(s)	273, 667
SchI	GAGTC	2 cut(s)	266, 355
ScrFI	CCNGG	2 cut(s)	350, 548
SfaNI	GCATC	2 cut(s)	109, 695
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	2 cut(s)	273, 667
SmlI	CTYRAG	2 cut(s)	164, 365
SmoI	CTYRAG	2 cut(s)	164, 365
Sse9I	AATT	2 cut(s)	414, 638
SsiI	CCGC	1 cut(s)	402
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	2 cut(s)	239, 503
StyD4I	CCNGG	2 cut(s)	348, 546
TaqI	TCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	414, 638
TfiI	GAWTC	3 cut(s)	179, 353, 446
Tru1I	TTAA	2 cut(s)	422, 612
Tru9I	TTAA	2 cut(s)	422, 612
TscAI	CASTG	3 cut(s)	82, 460, 681
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	6 cut(s)	82, 533, 536, 565, 628, 713
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	171, 225, 459, 651, 681
TspRI	CASTG	3 cut(s)	82, 460, 681
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	273, 667
XapI	RAATTY	2 cut(s)	414, 638
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	2 cut(s)	239, 503
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.