Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001097.1

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

11802 .. 16048

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001097.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgggaagaggcaaggttcagctgaagcggatcgagaacaagatcagcagacaagtaacattctcgaagcgaaggacaggattgctcaagaaagctcatgagatctcagttctgtgtgatgctgaggtagctttgattgtcttctccaccaaaggcaagctctttgagtacgctaccgattccaggaattacacgggagaggatttagaccccttaagcttgagggagcttcaaagtttggagcaacagattgatacagctcttaagcgcgtgcgagcaagaaagaaccaagtaatgcatgaatccatttcagagatgcagaaaaagcacaggacactgcaagagcaaaacaactcgctagcaaagaagctgaaggagaatgaaaagcttctgcaggaagaacctaataataatcagcagccaaacccctcaaccctcgtcttaatgccgccactgcaagctacatcaccaccagccctactctcttctctaactattggtggggctttccagggaagaggagacgcaatggatgaagatgctgaggatcatcagggaagcgctcaaactcggcctgccagtaacacactcatgccaccatggatggttcgccatttgaataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

208

Amino Acids

23.47

Weight (kDa)

9.46

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	28, 449
AclWI	GGATC	2 cut(s)	38, 555
AcuI	CTGAAG	2 cut(s)	44, 392
AfaI	GTAC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflII	CTTAAG	2 cut(s)	214, 263
AgsI	TTSAA	2 cut(s)	233, 619
AjnI	CCWGG	2 cut(s)	182, 510
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	38, 555
Aor51HI	AGCGCT	1 cut(s)	562
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	270, 563
AsuHPI	GGTGA	1 cut(s)	459
AsuNHI	GCTAGC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	2 cut(s)	123, 543
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	598
BciT130I	CCWGG	2 cut(s)	184, 512
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	564
BfrI	CTTAAG	2 cut(s)	214, 263
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	2 cut(s)	419, 449
BlsI	GCNGC	2 cut(s)	420, 450
Bme1390I	CCNGG	2 cut(s)	184, 512
BmrFI	CCNGG	2 cut(s)	184, 512
BmsI	GCATC	3 cut(s)	109, 306, 529
BmtI	GCTAGC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	133
Bpu10I	CCTNAGC	2 cut(s)	123, 543
BpuEI	CTTGAG	2 cut(s)	71, 241
BsaJI	CCNNGG	2 cut(s)	511, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	184, 512
BseDI	CCNNGG	2 cut(s)	511, 599
BseGI	GGATG	2 cut(s)	538, 609
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	114, 120, 534
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	516
BsmBI	CGTCTC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	30, 42, 102, 547
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	2 cut(s)	28, 449
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	3 cut(s)	115, 119, 535
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	38, 555
BspTI	CTTAAG	2 cut(s)	214, 263
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	511, 599
BssMI	GATC	4 cut(s)	30, 42, 102, 547
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	184, 512
Bst6I	CTCTTC	2 cut(s)	490, 511
BstAFI	CTTAAG	2 cut(s)	214, 263
BstC8I	GCNNGC	6 cut(s)	158, 272, 276, 360, 459, 576
BstDEI	CTNAG	3 cut(s)	106, 123, 543
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	538, 609
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	270, 563
BstKTI	GATC	4 cut(s)	33, 45, 105, 550
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	4 cut(s)	30, 42, 102, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 325, 454
BstNI	CCWGG	2 cut(s)	184, 512
BstSCI	CCNGG	2 cut(s)	182, 510
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	538, 609
BtsI	GCAGTG	2 cut(s)	335, 452
BtsIMutI	CAGTG	2 cut(s)	335, 452
Cac8I	GCNNGC	6 cut(s)	158, 272, 276, 360, 459, 576
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	270, 563
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	98, 299, 592, 600
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	106, 123, 543
DpnI	GATC	4 cut(s)	32, 44, 104, 549
DpnII	GATC	4 cut(s)	30, 42, 102, 547
Eam1104I	CTCTTC	2 cut(s)	490, 511
EarI	CTCTTC	2 cut(s)	490, 511
Eco130I	CCWWGG	1 cut(s)	599
Eco47III	AGCGCT	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	44, 392
EcoRII	CCWGG	2 cut(s)	182, 510
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	4 cut(s)	101, 302, 595, 603
FaiI	YATR	4 cut(s)	99, 300, 593, 601
FatI	CATG	4 cut(s)	97, 298, 591, 599
Fnu4HI	GCNGC	2 cut(s)	419, 449
FokI	GGATG	2 cut(s)	545, 616
Fsp4HI	GCNGC	2 cut(s)	419, 449
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	269, 562
GluI	GCNGC	2 cut(s)	419, 449
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	574
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	270, 563
Hin1II	CATG	4 cut(s)	101, 302, 595, 603
Hin6I	GCGC	2 cut(s)	268, 561
HinP1I	GCGC	2 cut(s)	268, 561
HindIII	AAGCTT	2 cut(s)	217, 386
HinfI	GANTC	2 cut(s)	179, 302
HphI	GGTGA	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	4 cut(s)	34, 64, 88, 98
HpyAV	CCTTC	2 cut(s)	66, 367
HpyCH4V	TGCA	5 cut(s)	298, 319, 340, 394, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 325, 454
HpyF3I	CTNAG	3 cut(s)	106, 123, 543
Hsp92II	CATG	4 cut(s)	101, 302, 595, 603
HspAI	GCGC	2 cut(s)	268, 561
Kzo9I	GATC	4 cut(s)	30, 42, 102, 547
LmnI	GCTCC	2 cut(s)	226, 241
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	3 cut(s)	109, 306, 529
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	55, 581
MalI	GATC	4 cut(s)	32, 44, 104, 549
MboI	GATC	4 cut(s)	30, 42, 102, 547
MboII	GAAGA	6 cut(s)	18, 133, 410, 477, 528, 548
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	7 cut(s)	118, 193, 216, 439, 446, 512, 538
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	215, 264, 443
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	2 cut(s)	214, 263
MspR9I	CCNGG	2 cut(s)	184, 512
MvaI	CCWGG	2 cut(s)	184, 512
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	128, 325, 454
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	4 cut(s)	30, 42, 102, 547
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	101, 302, 595, 603
NmeAIII	GCCGAG	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	300
PagI	TCATGA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	179, 302
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	420, 450
Psp6I	CCWGG	2 cut(s)	182, 510
PspGI	CCWGG	2 cut(s)	182, 510
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	215, 264, 443
SatI	GCNGC	2 cut(s)	419, 449
Sau3AI	GATC	4 cut(s)	30, 42, 102, 547
ScrFI	CCNGG	2 cut(s)	184, 512
SfaNI	GCATC	3 cut(s)	109, 306, 529
SfcI	CTRYAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	4 cut(s)	86, 214, 220, 263
SmoI	CTYRAG	4 cut(s)	86, 214, 220, 263
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	28, 449
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	182, 510
StyI	CCWWGG	1 cut(s)	599
TaqI	TCGA	2 cut(s)	33, 65
TasI	AATT	1 cut(s)	187
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	179, 302
Tru1I	TTAA	3 cut(s)	215, 264, 443
Tru9I	TTAA	3 cut(s)	215, 264, 443
TscAI	CASTG	2 cut(s)	342, 459
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	315, 396, 549
TspRI	CASTG	2 cut(s)	342, 459
Vha464I	CTTAAG	2 cut(s)	214, 263
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.