Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

29660127 .. 29664579

Gene Structure 4453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACGTTTTCGAAACGAAGAACTGGGTTGCTGAAGAAGGCGCATGAGATCTCTGTCATGTGCGATGCTCAGGTTGCTTTGATTGTCTTCTCTAACAAAGGGAAGCTCTTTGAATACGCAACTGATTCATGCATGGAGGATATACTTGAACGCTATGAGAGGTACTCATATGCAGAGAGACAGCTAGTGGAACCTGATTTTGATTCACAGGGTAACTGGCCCTTCGAACATGCTAGGCTGAAGGTGAAAGTTGAGCTTCTGCAGAGAAACCTAAGGCACTATTTGGGAGAAGATCTGGATTCATTGAGTATCAAAGAGATCCAAAGTTTGGAGCAACAGCTTGAAACTGCTCTTAAGCAAATTCGATCAAGAAAAAACCAACTCATGCATGAGTCGATCTCTGAGCTACAGAGGAAGGAGAAGGCAATCAAGGAGCAGAACAACTTGCTTTCAAAGAAGATTAAGGAGCACGAGAAGAATGTAGCGGAAGCTCAGGAGGTTCATGACTGGGAGCAGCAGCAGCAAAACCATGGCCTTAACCTGCTAGCACAGGGTCCAATTCCATGTTTGAACATGGGGGGCACTCAGCAAAATGATCAGTTCCTTCAGGTGAGGAGGAACCAGCTCGACCTTACTCTCGAGCCATCGTTGTATTCATGCCACCTTGGATGCTTTGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

246

Amino Acids

28.6

Weight (kDa)

8.21

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 172	5.7e-30	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 603
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	4 cut(s)	44, 107, 314, 644
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	5 cut(s)	167, 203, 398, 507, 625
AluBI	AGCT	8 cut(s)	22, 160, 238, 310, 394, 460, 545, 679
AluI	AGCT	8 cut(s)	22, 160, 238, 310, 394, 460, 545, 679
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	2 cut(s)	272, 586
ApeKI	GCWGC	3 cut(s)	568, 571, 574
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	273, 608
AsuHPI	GGTGA	3 cut(s)	67, 310, 676
AsuII	TTCGAA	2 cut(s)	65, 279
AsuNHI	GCTAGC	1 cut(s)	598
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	580, 583, 586
BccI	CCATC	1 cut(s)	706
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	3 cut(s)	239, 288, 599
BfmI	CTRYAG	2 cut(s)	314, 461
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	2 cut(s)	43, 603
BglII	AGATCT	2 cut(s)	102, 346
BisI	GCNGC	3 cut(s)	569, 572, 575
BlsI	GCNGC	3 cut(s)	570, 573, 576
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	273, 608
BmiI	GGNNCC	3 cut(s)	246, 609, 674
BmrI	ACTGGG	2 cut(s)	87, 571
BmsI	GCATC	2 cut(s)	109, 713
BmtI	GCTAGC	1 cut(s)	602
BmuI	ACTGGG	2 cut(s)	87, 571
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 437, 469
Bpu10I	CCTNAGC	2 cut(s)	123, 546
Bpu14I	TTCGAA	2 cut(s)	65, 279
BsaJI	CCNNGG	2 cut(s)	583, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	82, 275, 566
Bse21I	CCTNAGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	583, 718
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	4 cut(s)	137, 447, 560, 653
BseNI	ACTGG	3 cut(s)	82, 275, 566
BseRI	GAGGAG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	3 cut(s)	580, 583, 586
BshFI	GGCC	2 cut(s)	274, 588
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	274, 588
BsoBI	CYCGRG	1 cut(s)	692
Bsp119I	TTCGAA	2 cut(s)	65, 279
Bsp1286I	GDGCHC	2 cut(s)	525, 638
Bsp143I	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	2 cut(s)	274, 588
BspCNI	CTCAG	4 cut(s)	136, 448, 559, 652
BspHI	TCATGA	2 cut(s)	556, 734
BspLI	GGNNCC	3 cut(s)	246, 609, 674
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	2 cut(s)	43, 603
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	2 cut(s)	65, 279
BspTI	CTTAAG	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	82, 275, 566
BssECI	CCNNGG	2 cut(s)	583, 718
BssMI	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
BssSI	CACGAG	1 cut(s)	524
BssT1I	CCWWGG	2 cut(s)	583, 718
Bst2BI	CACGAG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	407
BstBI	TTCGAA	2 cut(s)	65, 279
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	5 cut(s)	123, 326, 456, 546, 639
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	7 cut(s)	45, 105, 349, 375, 422, 453, 652
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 574
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	2 cut(s)	314, 461
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	580, 583, 586
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	102, 346, 372
BstYI	RGATCY	3 cut(s)	102, 346, 372
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	274, 588
BtgI	CCRYGG	1 cut(s)	583
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	728
BveI	ACCTGC	2 cut(s)	43, 603
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	2 cut(s)	556, 734
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	273, 608
Csp6I	GTAC	1 cut(s)	217
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	5 cut(s)	123, 326, 456, 546, 639
DpnI	GATC	7 cut(s)	44, 104, 348, 374, 421, 452, 651
DpnII	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	583, 718
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	4 cut(s)	44, 107, 314, 644
Eco81I	CCTNAGG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	583, 718
EcoT22I	ATGCAT	2 cut(s)	188, 444
ErhI	CCWWGG	2 cut(s)	583, 718
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	569, 572, 575
Fsp4HI	GCNGC	3 cut(s)	569, 572, 575
FspBI	CTAG	3 cut(s)	239, 288, 599
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	569, 572, 575
HaeIII	GGCC	2 cut(s)	274, 588
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	179, 257, 353, 446
HphI	GGTGA	3 cut(s)	67, 310, 676
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	6 cut(s)	350, 423, 548, 557, 692, 735
HpyAV	CCTTC	6 cut(s)	85, 286, 289, 463, 469, 668
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	186, 227, 316, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 574
HpyF3I	CTNAG	5 cut(s)	123, 326, 456, 546, 639
HpySE526I	ACGT	1 cut(s)	59
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
LmnI	GCTCC	4 cut(s)	385, 487, 520, 565
Lsp1109I	GCAGC	3 cut(s)	580, 583, 586
LweI	GCATC	2 cut(s)	109, 713
MaeI	CTAG	3 cut(s)	239, 288, 599
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	55, 266
MalI	GATC	7 cut(s)	44, 104, 348, 374, 421, 452, 651
MboI	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
MboII	GAAGA	7 cut(s)	37, 84, 100, 133, 356, 523, 541
MflI	RGATCY	3 cut(s)	102, 346, 372
MhlI	GDGCHC	2 cut(s)	525, 638
MluCI	AATT	2 cut(s)	414, 612
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	7 cut(s)	21, 184, 207, 459, 544, 660, 663
Mph1103I	ATGCAT	2 cut(s)	188, 444
MseI	TTAA	3 cut(s)	408, 516, 591
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	128, 574
NcoI	CCATGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
NheI	GCTAGC	1 cut(s)	598
NlaIV	GGNNCC	3 cut(s)	246, 609, 674
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	2 cut(s)	188, 444
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	2 cut(s)	65, 279
PaeR7I	CTCGAG	1 cut(s)	692
PagI	TCATGA	2 cut(s)	556, 734
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	179, 257, 353
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	570, 573, 576
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	246, 609, 674
PspPI	GGNCC	2 cut(s)	273, 608
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	3 cut(s)	102, 346, 372
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	408, 516, 591
SatI	GCNGC	3 cut(s)	569, 572, 575
Sau3AI	GATC	7 cut(s)	42, 102, 346, 372, 419, 450, 649
Sau96I	GGNCC	2 cut(s)	273, 608
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	525, 638
SfaNI	GCATC	2 cut(s)	109, 713
SfcI	CTRYAG	2 cut(s)	314, 461
Sfr274I	CTCGAG	1 cut(s)	692
SfuI	TTCGAA	2 cut(s)	65, 279
SinI	GGWCC	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	407, 692
SmoI	CTYRAG	2 cut(s)	407, 692
Sse9I	AATT	2 cut(s)	414, 612
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	3 cut(s)	239, 288, 599
StyI	CCWWGG	2 cut(s)	583, 718
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	6 cut(s)	65, 279, 418, 449, 681, 693
TasI	AATT	2 cut(s)	414, 612
TfiI	GAWTC	3 cut(s)	179, 257, 353
Tru1I	TTAA	3 cut(s)	408, 516, 591
Tru9I	TTAA	3 cut(s)	408, 516, 591
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	568, 571, 574
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	171, 345, 545, 699, 723
Van91I	CCANNNNNTGG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	692
XspI	CTAG	3 cut(s)	239, 288, 599
Zsp2I	ATGCAT	2 cut(s)	188, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.