Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

35407545 .. 35413030

Gene Structure 5486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGAAGAGGCAAGGTTCAGCTGAAGCGGATCGAGAACAAGATCAGCAGGCAAGTAACATTCTCGAAGCGAAGGACTGGATTGATCAAGAAAGCTCATGAGATCTCAGTTCTGTGTGATGCTGATGTAGCTTTGATTGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACGCTACTGATTCCAGCATGGATGCGATCCTGGAGCGATATGAACAATACTCGTATGCAGAAAGGCAGAGCACGGGTATTCCTGATTCTCAACCACAGGGAAGTTGGTTCATGGAATTTCCCAAGCTTGCGGCAAGGATTGAAATCTTACAAAGAAAAATAAGGAATTACACGGGAGAGGATTTAGACCCCTTGAGTTTGAGGGAGCTTCAAAATTTGGAGCAACAGATCGATACAGCTCTTAAGCGCGTGCGAGCAAGAAAGAACCAAGCAGTGCATGAATCCCTTTCAGAGATGCACAAGAAGCAAAGGACACTGCAAGAGCAAAACAACTCGCTAGCAAAGAAGCTGAAGGAGAACGAAAAGCTGCTGCAGGAAGAACCTAATGATAATCAGCAGCCAAACCCCTCAACCCTCGTGTTAATGCCTACTCAGCAAGCTCCAAAATCACCAGCACTACTCTCTTCTCTAACTATTGGTGGGGATTTCCAGGGAAGAAGAGATGCAATGGATGAAGATGTTAGGGATTATCAGGGAAGAGCAGAAACTCAGCCTGCTAGTAGCACAGTCATGCCACCATGGATGGTTCGCCATTTGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

258

Amino Acids

29.45

Weight (kDa)

9.19

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	89 - 173	5.6e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AciI	CCGC	2 cut(s)	28, 299
AclWI	GGATC	2 cut(s)	38, 190
AcsI	RAATTY	2 cut(s)	284, 382
AcuI	CTGAAG	2 cut(s)	44, 539
AfaI	GTAC	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	311, 380, 766
AjnI	CCWGG	2 cut(s)	198, 657
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	38, 190
ApeKI	GCWGC	3 cut(s)	535, 538, 565
ApoI	RAATTY	2 cut(s)	284, 382
AspLEI	GCGC	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	609
AsuNHI	GCTAGC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	522, 525, 577
BccI	CCATC	1 cut(s)	745
BciT130I	CCWGG	2 cut(s)	200, 659
BclI	TGATCA	1 cut(s)	84
BfaI	CTAG	2 cut(s)	506, 726
BfmI	CTRYAG	1 cut(s)	539
BfrI	CTTAAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	4 cut(s)	300, 536, 539, 566
BlsI	GCNGC	4 cut(s)	301, 537, 540, 567
Bme1390I	CCNGG	2 cut(s)	200, 659
BmrFI	CCNGG	2 cut(s)	200, 659
BmsI	GCATC	4 cut(s)	109, 181, 453, 661
BmtI	GCTAGC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	382
Bsa29I	ATCGAT	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	658, 746
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	200, 659
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	658, 746
BseGI	GGATG	3 cut(s)	196, 685, 756
BseJI	GATNNNNATC	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	3 cut(s)	120, 614, 731
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	522, 525, 577
Bsh1236I	CGCG	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	2 cut(s)	28, 299
BspCNI	CTCAG	3 cut(s)	119, 613, 730
BspDI	ATCGAT	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	543
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	38, 190
BspQI	GCTCTTC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	658, 746
BssMI	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
BssSI	CACGAG	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	746
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	2 cut(s)	200, 659
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	3 cut(s)	637, 661, 700
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	8 cut(s)	50, 158, 297, 419, 423, 507, 606, 723
BstDEI	CTNAG	3 cut(s)	106, 600, 717
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	3 cut(s)	196, 685, 756
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	6 cut(s)	33, 45, 87, 105, 198, 399
BstMBI	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 472, 601
BstNI	CCWGG	2 cut(s)	200, 659
BstSCI	CCNGG	2 cut(s)	198, 657
BstSFI	CTRYAG	1 cut(s)	539
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	522, 525, 577
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	399
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	196, 685, 756
BtsI	GCAGTG	2 cut(s)	447, 482
BtsIMutI	CAGTG	2 cut(s)	447, 482
Cac8I	GCNNGC	8 cut(s)	50, 158, 297, 419, 423, 507, 606, 723
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	417
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	6 cut(s)	98, 187, 280, 446, 739, 747
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	106, 600, 717
DpnI	GATC	6 cut(s)	32, 44, 86, 104, 197, 398
DpnII	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
Eam1104I	CTCTTC	3 cut(s)	637, 661, 700
EarI	CTCTTC	3 cut(s)	637, 661, 700
Eco130I	CCWWGG	1 cut(s)	746
Eco57I	CTGAAG	2 cut(s)	44, 539
EcoRII	CCWGG	2 cut(s)	198, 657
EcoT14I	CCWWGG	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	746
FaeI	CATG	6 cut(s)	101, 190, 283, 449, 742, 750
FaiI	YATR	8 cut(s)	99, 188, 210, 225, 281, 447, 740, 748
FatI	CATG	6 cut(s)	97, 186, 279, 445, 738, 746
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	300, 536, 539, 566
FokI	GGATG	3 cut(s)	203, 692, 763
Fsp4HI	GCNGC	4 cut(s)	300, 536, 539, 566
FspBI	CTAG	2 cut(s)	506, 726
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	4 cut(s)	300, 536, 539, 566
GsuI	CTGGAG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	101, 190, 283, 449, 742, 750
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	4 cut(s)	179, 254, 449, 766
HphI	GGTGA	1 cut(s)	609
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	5 cut(s)	34, 64, 88, 98, 251
HpyAV	CCTTC	2 cut(s)	66, 514
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4V	TGCA	6 cut(s)	227, 445, 466, 487, 541, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 472, 601
HpyF3I	CTNAG	3 cut(s)	106, 600, 717
Hsp92II	CATG	6 cut(s)	101, 190, 283, 449, 742, 750
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
LguI	GCTCTTC	1 cut(s)	700
LmnI	GCTCC	4 cut(s)	202, 373, 388, 613
Lsp1109I	GCAGC	3 cut(s)	522, 525, 577
LweI	GCATC	4 cut(s)	109, 181, 453, 661
MaeI	CTAG	2 cut(s)	506, 726
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	32, 44, 86, 104, 197, 398
MboI	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
MboII	GAAGA	8 cut(s)	18, 133, 557, 624, 675, 678, 695, 717
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	3 cut(s)	284, 334, 382
MnlI	CCTC	4 cut(s)	340, 363, 586, 593
MseI	TTAA	2 cut(s)	411, 590
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	200, 659
MvaI	CCWGG	2 cut(s)	200, 659
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	128, 472, 601
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	6 cut(s)	101, 190, 283, 449, 742, 750
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	700
PfeI	GAWTC	4 cut(s)	179, 254, 449, 766
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	4 cut(s)	301, 537, 540, 567
Psp6I	CCWGG	2 cut(s)	198, 657
PspGI	CCWGG	2 cut(s)	198, 657
PstI	CTGCAG	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	700
SaqAI	TTAA	2 cut(s)	411, 590
SatI	GCNGC	4 cut(s)	300, 536, 539, 566
Sau3AI	GATC	6 cut(s)	30, 42, 84, 102, 195, 396
ScrFI	CCNGG	2 cut(s)	200, 659
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	4 cut(s)	109, 181, 453, 661
SfcI	CTRYAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	361, 410
SmoI	CTYRAG	2 cut(s)	361, 410
Sse9I	AATT	3 cut(s)	284, 334, 382
SsiI	CCGC	2 cut(s)	28, 299
SspMI	CTAG	2 cut(s)	506, 726
StyD4I	CCNGG	2 cut(s)	198, 657
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	1 cut(s)	736
TaqI	TCGA	3 cut(s)	33, 65, 399
TasI	AATT	3 cut(s)	284, 334, 382
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	4 cut(s)	179, 254, 449, 766
Tru1I	TTAA	2 cut(s)	411, 590
Tru9I	TTAA	2 cut(s)	411, 590
TscAI	CASTG	2 cut(s)	447, 489
TseI	GCWGC	3 cut(s)	535, 538, 565
TspDTI	ATGAA	4 cut(s)	225, 268, 462, 696
TspRI	CASTG	2 cut(s)	447, 489
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	2 cut(s)	284, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XspI	CTAG	2 cut(s)	506, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.