Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002429

Physical Location & Seq

Genomic Coordinates Reverse (-)

83300739 .. 83305360

Gene Structure 4622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG601100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGAAGAGGCAAGGTTCAGCTGAAGCGGATCGAGAACAAGATCAGCAGACAAGTAACATTCTCGAAGCGAAGGACAGGATTGCTCAAGAAAGCTCATGAGATCTCAGTTCTGTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACGCTACCGATTCCAGCATGGAGGGGATCCTGGAGCGATATGAACAATACTCGTATGCAGAAAGGCAGAGCATGGGTGTTCCTGCTTCTGAATCACAGGGAAACTGGTCCATGGAATTTCCCAAGCTTGCGGCAAGGATTGAAATCTTACAAAGGAAAATAAGGAATTACACGGGAGAGGATTTAGACCCCTTAAGCTTGAGGGAGCTTCAAAGTTTGGAGCAACAGATTGATACAGCTCTTAAGCGCGTGCGAGCAAGAAAGTCGAGTACTGACAGTAAGTATGAAAATGCAGTGGGGCTTTCCAGGGAAGAGGAGACGCAATGGATGAAGATGCTGATGATCATCAGGGAAGACCTCAAACTTGGCCTGCCAGTAACACACTCATGCCACCATGGATGGTTCGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

193

Amino Acids

22.24

Weight (kDa)

9.18

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 146	1.3e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26310 AT1G69120 AT1G69120 AT1G69120
fragaria_vesca	FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_4g29600 FvH4_6g46410
malus_domestica	MD09G1074100.v1.1 MD13G1059200.v1.1 MD16G1058500.v1.1 MD17G1065500.v1.1
prunus_persica	Prupe.1G290600_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1 Prupe.3G249300_v2.0.a1
pyrus_communis	pycom16g05110 pycom17g06540
rosa_chinensis	RchiOBHm_Chr2g0164941 RchiOBHm_Chr4g0437841
rosa_laevigata	RLG00000006408 RLG00000021499
rosa_multiflora	Rmu_sc0001097.1_g000003 Rmu_sc0004193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086190 Rroxscaffold_5G00379010
rosa_rugosa	Rorug02G0511400 Rorug04G0304200 Rorug04G0304300 Rorug04G0304300 Rorug04G0304400
rosa_samantha	Rh2AG579700 Rh2BG590700 Rh2CG561400 Rh2DG601100 Rh4AG356500 Rh4CG381400 Rh4DG361700
rosa_wichuraiana	Rw2G048120 Rw4G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AciI	CCGC	2 cut(s)	28, 299
AclWI	GGATC	3 cut(s)	38, 190, 203
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	170, 439
AflII	CTTAAG	2 cut(s)	361, 410
AgsI	TTSAA	2 cut(s)	311, 380
AjnI	CCWGG	2 cut(s)	198, 473
AluBI	AGCT	8 cut(s)	22, 95, 131, 160, 295, 366, 376, 407
AluI	AGCT	8 cut(s)	22, 95, 131, 160, 295, 366, 376, 407
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	3 cut(s)	38, 190, 203
AoxI	GGCC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	133, 528
BbvCI	CCTCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	561
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	2 cut(s)	200, 475
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	479
BfrI	CTTAAG	2 cut(s)	361, 410
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	200, 475
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	200, 475
BmsI	GCATC	2 cut(s)	109, 492
BpiI	GAAGAC	2 cut(s)	133, 528
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	2 cut(s)	71, 388
BsaBI	GATNNNNATC	2 cut(s)	311, 512
BsaJI	CCNNGG	3 cut(s)	279, 474, 562
Bse1I	ACTGG	2 cut(s)	278, 542
Bse3DI	GCAATG	1 cut(s)	497
Bse8I	GATNNNNATC	2 cut(s)	311, 512
BseBI	CCWGG	2 cut(s)	200, 475
BseDI	CCNNGG	3 cut(s)	279, 474, 562
BseGI	GGATG	2 cut(s)	501, 572
BseJI	GATNNNNATC	2 cut(s)	311, 512
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	114, 120
BseNI	ACTGG	2 cut(s)	278, 542
BseRI	GAGGAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	479
BsmBI	CGTCTC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	30, 42, 102, 195, 510
Bsp19I	CCATGG	2 cut(s)	279, 562
BspACI	CCGC	2 cut(s)	28, 299
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	2 cut(s)	115, 119
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	3 cut(s)	38, 190, 203
BspTI	CTTAAG	2 cut(s)	361, 410
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	278, 542
BssECI	CCNNGG	3 cut(s)	279, 474, 562
BssMI	GATC	5 cut(s)	30, 42, 102, 195, 510
BssT1I	CCWWGG	2 cut(s)	279, 562
Bst2UI	CCWGG	2 cut(s)	200, 475
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	474
BstAFI	CTTAAG	2 cut(s)	361, 410
BstC8I	GCNNGC	5 cut(s)	158, 297, 419, 423, 539
BstDEI	CTNAG	2 cut(s)	106, 123
BstDSI	CCRYGG	2 cut(s)	279, 562
BstF5I	GGATG	2 cut(s)	501, 572
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	33, 45, 105, 198, 513
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	5 cut(s)	30, 42, 102, 195, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	200, 475
BstSCI	CCNGG	2 cut(s)	198, 473
BstUI	CGCG	1 cut(s)	417
BstV2I	GAAGAC	2 cut(s)	133, 528
BstX2I	RGATCY	2 cut(s)	102, 195
BstYI	RGATCY	2 cut(s)	102, 195
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	2 cut(s)	279, 562
BtsCI	GGATG	2 cut(s)	501, 572
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	5 cut(s)	158, 297, 419, 423, 539
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	169, 438
CviAII	CATG	6 cut(s)	98, 187, 241, 280, 555, 563
CviQI	GTAC	2 cut(s)	169, 438
DdeI	CTNAG	2 cut(s)	106, 123
DpnI	GATC	5 cut(s)	32, 44, 104, 197, 512
DpnII	GATC	5 cut(s)	30, 42, 102, 195, 510
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	279, 562
Eco47I	GGWCC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	198, 473
EcoT14I	CCWWGG	2 cut(s)	279, 562
ErhI	CCWWGG	2 cut(s)	279, 562
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	6 cut(s)	101, 190, 244, 283, 558, 566
FaiI	YATR	9 cut(s)	99, 188, 210, 225, 242, 281, 453, 556, 564
FatI	CATG	6 cut(s)	97, 186, 240, 279, 554, 562
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	537
HgaI	GACGC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	101, 190, 244, 283, 558, 566
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	2 cut(s)	293, 364
HinfI	GANTC	2 cut(s)	179, 260
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	4 cut(s)	34, 64, 88, 98
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	227, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	106, 123
Hsp92II	CATG	6 cut(s)	101, 190, 244, 283, 558, 566
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	5 cut(s)	30, 42, 102, 195, 510
LmnI	GCTCC	3 cut(s)	202, 373, 388
LweI	GCATC	2 cut(s)	109, 492
MaeIII	GTNAC	2 cut(s)	55, 544
MalI	GATC	5 cut(s)	32, 44, 104, 197, 512
MboI	GATC	5 cut(s)	30, 42, 102, 195, 510
MboII	GAAGA	5 cut(s)	18, 133, 491, 511, 533
MflI	RGATCY	2 cut(s)	102, 195
MluCI	AATT	2 cut(s)	284, 334
MnlI	CCTC	6 cut(s)	118, 184, 340, 363, 475, 536
MseI	TTAA	3 cut(s)	362, 411, 580
MslI	CAYNNNNRTG	1 cut(s)	553
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	2 cut(s)	361, 410
MspR9I	CCNGG	2 cut(s)	200, 475
MvaI	CCWGG	2 cut(s)	200, 475
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	128
NcoI	CCATGG	2 cut(s)	279, 562
NdeII	GATC	5 cut(s)	30, 42, 102, 195, 510
NlaIII	CATG	6 cut(s)	101, 190, 244, 283, 558, 566
NlaIV	GGNNCC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	179, 260
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	198, 473
PspGI	CCWGG	2 cut(s)	198, 473
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	102, 195
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	170, 439
RsaNI	GTAC	2 cut(s)	169, 438
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	362, 411, 580
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	30, 42, 102, 195, 510
Sau96I	GGNCC	1 cut(s)	276
ScaI	AGTACT	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	200, 475
SfaNI	GCATC	2 cut(s)	109, 492
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	4 cut(s)	86, 361, 367, 410
SmoI	CTYRAG	4 cut(s)	86, 361, 367, 410
Sse9I	AATT	2 cut(s)	284, 334
SsiI	CCGC	2 cut(s)	28, 299
StyD4I	CCNGG	2 cut(s)	198, 473
StyI	CCWWGG	2 cut(s)	279, 562
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	33, 65, 434
TasI	AATT	2 cut(s)	284, 334
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	179, 260
Tru1I	TTAA	3 cut(s)	362, 411, 580
Tru9I	TTAA	3 cut(s)	362, 411, 580
TscAI	CASTG	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	225, 468, 512
TspRI	CASTG	1 cut(s)	468
Vha464I	CTTAAG	2 cut(s)	361, 410
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.